Paracoccus mutanolyticus: DPM13_16955
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Entry
DPM13_16955 CDS
T05551
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pmut
Paracoccus mutanolyticus
Pathway
pmut03030
DNA replication
pmut03410
Base excision repair
pmut03420
Nucleotide excision repair
pmut03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DPM13_16955
03410 Base excision repair
DPM13_16955
03420 Nucleotide excision repair
DPM13_16955
03430 Mismatch repair
DPM13_16955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmut03032
]
DPM13_16955
03400 DNA repair and recombination proteins [BR:
pmut03400
]
DPM13_16955
Enzymes [BR:
pmut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DPM13_16955
DNA replication proteins [BR:
pmut03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DPM13_16955
DNA repair and recombination proteins [BR:
pmut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DPM13_16955
NER (nucleotide excision repair)
GGR (global genome repair) factors
DPM13_16955
MMR (mismatch excision repair)
DNA ligase
DPM13_16955
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DPM13_16955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
DNA_ligase_ZBD
HHH_2
Nlig-Ia
GreA_GreB_N
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AWX94063
LinkDB
All DBs
Position
3101980..3104052
Genome browser
AA seq
690 aa
AA seq
DB search
MTLTRGPARAERLEAGVAQDDIQGQPAPGELPAVETLDPAAAADEVAALVDELQRANTAY
HADDAPFISDADYDARKRRLAEIEARFPELASRDSPTGQVGAAPDSRFGKVRHALPMLSL
ENAFDEADVRAFVQRVRSFLNLGADHPLAFTGEPKIDGLSLSLRYEAGALVLASTRGDGA
VGENVTANARTIADIPQTLRGKDIPDVLEVRGEVYMTHEDFQALNQAGTGRVFANPRNAA
AGSLRQLDPAVTASRPLRFFAYAWGELSAPLAETQWDAVQRLGGMGFQTNPLMALCPTVA
DMLALWARVEQMRATLGYDIDGVVYKVNDLAWQARLGMRSTTPRWALAHKFPAERAWTRL
EAIDIQVGRTGALSPVARLTPVTVGGVVVSNATLHNEDYIAGRGADGREIRGGKDIRVGD
WVEVYRAGDVIPKVADVDLSRRPPDAQPYAFPDSCPDCGSPAIREEGDSVRRCTGGLICP
AQAVEKLRHFVSRPAFDIEGLGAKQIELFHRLGWIAEPADIFTLAERDAEGAKLLSDARP
EVDDDLLVSLGVEKLQLSNSSHETALRRLSQTPLSAIKGWGEKSAASLFQAIRRKREIPM
ARLLFGLGIRHVGEVAAADLSRHFRSWDALVQGLDRARPAALAHRAADVAAAAERVVAAA
EGRRARSAKRGPRRLTRTRSRRMPPLPGTI
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgaccctgacgaggggccctgccagggccgagagactggaggcaggggtggcgcaagac
gatatccaggggcagcccgcgccgggggaactgccggcggtcgaaaccctagacccggcc
gcggccgcggatgaggttgccgcgctggtcgatgaattgcagcgcgccaacaccgcttat
cacgccgatgacgcacccttcatcagcgatgcggattacgatgccaggaagcgccggctg
gccgagatcgaggcgcgctttcccgaactcgccagccgcgacagcccgacgggccaggtc
ggcgcggcgccggacagccgcttcggcaaggtgcgtcacgcgctgccgatgctgtcgctg
gaaaacgccttcgacgaggccgacgtgcgcgccttcgtccagcgtgtgcgatccttcctg
aatctcggcgccgatcatccccttgccttcacgggcgagcccaagatcgacgggctgtcg
ctgtccctgcgttacgaggcgggcgcgctggtgctggcctcgacacggggcgacggcgcg
gtgggcgagaacgtgaccgcgaatgcccgcaccatcgccgacattccccagacgctgcgg
ggcaaggacattcccgacgtgcttgaggttcgcggcgaagtctacatgacgcacgaggat
ttccaggcgctgaaccaggccggaaccggccgcgtctttgccaacccgcgcaacgccgcg
gcggggtcgctgcgccagctcgaccctgcggtgacggcctcgcgtccgctgcgctttttc
gcctacgcctggggcgaactcagcgcgcctctggccgaaacgcaatgggacgccgtgcag
cgcctgggcgggatggggtttcagaccaatccgctgatggcgctgtgcccgacggtcgcg
gacatgctggcgctttgggcgcgggtcgaacagatgcgcgcgaccttgggctatgacatc
gacggggtggtctacaaggtcaacgacctggcatggcaggcgcggctggggatgcgctcg
accacgccccgctgggcgctggcccacaagttccccgccgaacgcgcctggacgcggctg
gaagcgatcgacatccaggtcggccgcaccggcgcgctgagcccggtcgcgcggctgacc
ccggtgacggtgggcggcgtcgtcgtctcgaacgccacgctgcacaacgaggattacatc
gccggccgcggcgccgacgggcgcgagatccggggcggcaaggatatccgcgtcggcgat
tgggtcgaggtctatcgcgcgggcgacgtgatccccaaggtggccgacgtggacctgtcg
cgccgtccgcccgacgcgcaaccctatgcctttcccgacagctgccccgactgcggctct
cccgcgatccgggaagagggcgactcggtccggcgctgcacgggcggtttgatctgcccg
gcgcaggcggttgaaaagctgcgccatttcgtctcgcgtcccgccttcgacatcgagggg
ctgggggccaagcagatcgaactgttccatcgcctggggtggatcgccgagccggcggat
atcttcaccctggccgagcgcgatgccgagggcgcaaagctgctttccgacgcgcgaccc
gaggtggacgacgatctgctggtctcgctgggcgtcgaaaagctgcagctttccaattca
agccatgagacggccttgcggcgcctgtcgcagacaccgctttccgcgatcaagggatgg
ggcgagaaaagcgcggccagcctgttccaggcgatccgccgcaagcgcgagatcccgatg
gcgcggctgctgttcgggctgggcatccgccatgtgggcgaggtggcggccgccgacctg
tcccggcatttccggtcctgggatgcgctggtgcaggggctggaccgtgcccgtccggcg
gccctggcccatcgcgcagcggatgtcgcagccgccgccgagcgggttgtcgccgccgcc
gagggccggcgcgcccgctcagcgaagcgcgggccgcggcgcttgacgcgaacgcggtcc
cgccggatgccgcctctgcctgggacgatctga
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