Pseudomonas muyukensis: KSS95_10990
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Entry
KSS95_10990 CDS
T07704
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pmuy
Pseudomonas muyukensis
Pathway
pmuy03030
DNA replication
pmuy03410
Base excision repair
pmuy03420
Nucleotide excision repair
pmuy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmuy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KSS95_10990 (ligA)
03410 Base excision repair
KSS95_10990 (ligA)
03420 Nucleotide excision repair
KSS95_10990 (ligA)
03430 Mismatch repair
KSS95_10990 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmuy03032
]
KSS95_10990 (ligA)
03400 DNA repair and recombination proteins [BR:
pmuy03400
]
KSS95_10990 (ligA)
Enzymes [BR:
pmuy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KSS95_10990 (ligA)
DNA replication proteins [BR:
pmuy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KSS95_10990 (ligA)
DNA repair and recombination proteins [BR:
pmuy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KSS95_10990 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KSS95_10990 (ligA)
MMR (mismatch excision repair)
DNA ligase
KSS95_10990 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KSS95_10990 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
DUF2481
Motif
Other DBs
NCBI-ProteinID:
QXH37314
LinkDB
All DBs
Position
2436440..2438794
Genome browser
AA seq
784 aa
AA seq
DB search
MNAESRIHALRAELDQHNYRYYVLDEPSVPDAEYDRLFRELKALEAEHPHLVTADSPTQR
VGGAALAAFSQVRHEIPMLSLGNAFEEDDLRDFDRRVVEGLDLPGGDLFATRAAVDYSCE
PKLDGLAVSLLYRDGQLVQGATRGDGSTGEDISANVRTVRNIPLKLQGQGWPAVLEVRGE
VYMSKAGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSEA
FGDSHIGILEKLKTWGLPISRELRHAAGIEQCLAYYRDIGARRNDLPYEIDGVVFKVNAL
AAQRELGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVS
NATLHNMDEIARLGLRIGDTVIIRRAGDVIPQVMQVVLERRPADARAVEVPSSCPVCGSQ
VERTQLVKRSKGKETTSEGAVYRCVGRLGCAAQLKQAIIHYVSRRAMDIDGLGEKSVEQL
VDENLIRSPADLYQLAFEQVVALEGFAEVSSRKLLEAIEASKRPSLARFIYALGIPDVGE
ETAKVLARSLGSLARVQVALPQVLTYLPDIGLEVAFEIHNFFEDAHNRAVIRQLLDSGMQ
LQEEGELAAEFAASTTLAGMLAKLDIPSVGPTGAEKLVDKLGTLDKIIAADGIDLRQALN
TKAADGVREFFKVEANQQLARAIEAQLLDFGMHWSCEKKTAEGLPLAGQTWVLTGTLERM
SRDIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVAVMDEEAFVGFLAER
GISV
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccgaatcccgaatccatgcgttgcgagccgagctcgaccagcacaactaccgc
tattacgtgctcgatgagcccagtgtgccggacgccgaatatgaccgcctgttcagggag
ctcaaggcgctggaggccgagcatccgcacctggtgaccgccgattcgccgacccagcgc
gtcggcggcgcggcgctcgccgcgttcagccaggtgcgccatgaaatccccatgctcagc
ctgggcaatgccttcgaggaagacgacctgcgcgacttcgaccgtcgcgtggtcgagggt
ctggacctgccgggcggcgacctgttcgccacccgcgccgccgtcgactatagctgcgag
cccaagctcgacggcttggcggtgagcctgctgtatcgcgatggccagctggtgcaaggg
gccactcgcggcgatggcagcaccggcgaggacatcagcgccaacgtgcgcaccgtgcgc
aacatcccgctgaaactgcaggggcaaggctggccggcggtgctggaagtgcgtggcgag
gtgtacatgagcaaggccggtttcgaccggctcaatgccgcccaggccgaagccggcggc
aagaccttcgccaacccgcgcaacgccgccgccggcagcttgcgccaactggactcgaag
atcaccgccagtcgcccgctggagttctgctgctatggcgtcggccaagtgtccgaggcg
ttcggcgacagccatatcggcattctcgagaagctcaagacctggggcttgccgatcagc
cgcgagctgcgccacgccgccgggatcgagcagtgcctggcctattaccgcgatatcggc
gcccgtcgcaacgacctgccctacgagatcgacggcgtggtgttcaaggtcaatgccctg
gccgcgcagcgcgagctgggtttccgcgcccgtgagccgcgctgggccatcgcccacaag
ttcccggccatggaagagctcaccgaggtgctcgatgtcgagttccaggtcggccgtacc
ggtgcggtaaccccggtggcccgcctgaagccggtcaaggtcgccggggtcacggtgtcc
aacgccaccttgcacaacatggatgagatcgcccgcctgggcctgcgcattggcgacacg
gtgatcatccgccgggccggtgacgtgatcccccaggtgatgcaggtggtgctcgagcgt
cgccccgcggatgcccgcgcggtcgaggtgccgagcagttgcccggtgtgcggctcgcag
gtcgagcgcacccagctggtcaagcgcagcaagggcaaggaaaccaccagcgaaggcgcg
gtgtaccgctgcgtcgggcgcctgggctgcgcggcccagctcaagcaggcgatcatccac
tacgtgtcgcgccgggccatggacatcgacggcctgggcgagaagagcgtcgagcagttg
gtcgatgagaacctgattcgctcgccggccgacctctaccagctcgcgttcgagcaggtg
gtcgccctcgaaggtttcgccgaggtctccagccgcaagttgctggaggccatcgaagcc
agcaagcgcccgagcctggcgcgcttcatctacgccctgggcatccccgacgtgggcgag
gaaactgccaaggtgttggcgcgctcgctgggcagcctggcgcgggtgcaggtggccttg
ccgcaagtgctcacctacctgccggacatcggcctggaggtcgccttcgagatccacaac
ttcttcgaggacgcgcacaaccgcgcggtgatcaggcaattgctcgacagcggcatgcag
ttgcaggaggagggcgagctggctgccgagttcgcggccagcaccaccctggccggcatg
ctcgccaagctcgatatcccatcggtggggccaaccggggccgagaagctggtcgacaag
ctgggcaccctggacaagatcattgccgccgacggcatcgacctgcgccaggccttgaat
accaaggcggctgacggcgtgcgcgagttcttcaaggtcgaggccaaccagcagttggcc
cgtgccatcgaggcccagttgctggacttcggcatgcactggtcgtgcgagaagaagacc
gccgagggcctgcccctggccggccagacctgggtgctgaccggcaccctggagcgcatg
agccgcgacatcgccaaggacaagctggaaagcctgggggccaaggtggcgggctcggtg
tccggcaagacccactgcgtggtcgccggccccggcgccggctccaagctggccaaggcc
gctgagctgggcgttgcggtgatggacgaggaggcattcgtgggcttcctggcggagcgc
ggcatcagcgtttga
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