Persephonella marina: PERMA_1840
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Entry
PERMA_1840 CDS
T00870
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pmx
Persephonella marina
Pathway
pmx03030
DNA replication
pmx03410
Base excision repair
pmx03420
Nucleotide excision repair
pmx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PERMA_1840 (ligA)
03410 Base excision repair
PERMA_1840 (ligA)
03420 Nucleotide excision repair
PERMA_1840 (ligA)
03430 Mismatch repair
PERMA_1840 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmx03032
]
PERMA_1840 (ligA)
03400 DNA repair and recombination proteins [BR:
pmx03400
]
PERMA_1840 (ligA)
Enzymes [BR:
pmx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PERMA_1840 (ligA)
DNA replication proteins [BR:
pmx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PERMA_1840 (ligA)
DNA repair and recombination proteins [BR:
pmx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PERMA_1840 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PERMA_1840 (ligA)
MMR (mismatch excision repair)
DNA ligase
PERMA_1840 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PERMA_1840 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
zf-IS66
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ACO03760
UniProt:
C0QSF6
LinkDB
All DBs
Position
complement(1766087..1768231)
Genome browser
AA seq
714 aa
AA seq
DB search
MYTKERERELIQRTKELLKIKKEHIKTKEDAEAIIEDLRDVIRYHDWRYYVLANPVISDY
EYDQLFHLLKDIESRFPELITPDSPTQRVPSELTKEFPQVKHLAPMLSLDNSYNEEDLRE
FDRRVREAVGIDIIEYAVEPKFDGAGISLVYEKDMFVRGATRGDGVVGEDITPNIRVIKT
VPLSAEFSVYGIDRIEIRGEVLINKEKFKEINHQRLEEGLPPLANPRNAAAGSLRLQDPK
EVAKRGLEAFVYQITYAVDKDGNNLLGNKLRYHYDSIKILYELGFKSPYKEIKVCRGIDE
VIDYCREWERKRDDYPYEIDGMVIKVNDISLYDRLGVTSHHPRWAIAFKFRARQATTKII
KVVFQVGRTGAVTPVAKLEPVEIGGVTVSSVSLINEDFIKEKDIRVGDLVLIERAGDVIP
YVVKVVTEARTGKEKPIQFPKECPSCGSPLVKPAGEAVWRCININCPAQVVERIIYFASK
DAMDIRGLGEANIRKFYQLGFLRSIPDIYRLPYDKIIQLEGFGQKSVENLKKAIEESKNR
PINRLITGLGIRFVGKVTARTLAENINCVEDLKDWSVEDLERLPDVGYVVAHSIYDFFHN
PDNIKMIQELKRLGVQTCKEKEEVVENIFEGKTFVFTGTLSCCSREIAQEIVERLGGHAS
SSVSRKTSYVVVGENPGSKYRKALSLGVQILDEKQFIEMIKDHIPDDLKDKVHL
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgtacaccaaggaaagggaaagggagcttatacagagaacaaaagagcttttaaagata
aaaaaagaacatataaaaacaaaggaagatgcagaggctataatagaggatcttagagat
gttataagataccacgactggagatactatgtacttgcaaaccctgtaatatcagattac
gagtatgatcaactctttcatctcctgaaggatatagaaagcagatttcctgagcttata
acacctgattcaccaactcagagagttccttctgagcttacaaaggagtttcctcaggta
aaacatcttgcccctatgttatcacttgacaactcctataacgaggaggatctgagggag
tttgacaggagagtgagagaggctgtaggaattgatattattgagtatgctgttgagcca
aaatttgatggtgcaggtatatcccttgtttatgaaaaagatatgtttgtgagaggtgca
acaaggggagatggtgttgttggagaggatataacgccaaatataagggttataaaaaca
gttccattatcagctgaattttcagtttatggtattgataggatagagataagaggagag
gttcttataaataaggaaaagttcaaggagataaaccaccagagacttgaggaaggtctt
cctccacttgcaaacccaaggaatgctgcagcaggttctttgagacttcaggatcctaag
gaggttgcaaagagaggtcttgaggcttttgtttaccagataacatacgctgttgataaa
gatgggaataatcttcttggaaataaactgagataccattacgactctataaaaatactt
tacgagcttgggtttaaatctccctataaagagataaaggtatgcagaggtattgatgag
gttattgattactgcagggagtgggagagaaaaagggatgattatccatatgagatagat
ggtatggtaataaaggtcaacgatatatctctgtacgacagattaggggtgacatcacac
catcctagatgggctatagcattcaagttcagggctagacaggcaacaacaaaaataata
aaggttgtttttcaggttgggagaacaggtgctgtaacacctgttgcaaaacttgaacct
gttgagataggaggtgttacagtttcatccgtgtccctgataaacgaggattttatcaaa
gagaaagatataagggttggagatcttgttcttatagagagggcaggtgatgttatccct
tatgttgttaaggttgtaacagaggctagaacaggaaaggaaaaacctatacagtttcca
aaggaatgtccatcctgcggttcaccgcttgttaaacctgcaggagaggctgtatggaga
tgtataaatataaactgtccggcacaggttgttgaaaggataatatacttcgcatctaag
gatgcaatggatataagaggccttggagaggcaaatataaggaagttctatcagcttgga
tttttaagatcaatacctgatatttacagactgccttatgacaagatcattcagcttgaa
ggttttggacagaaatctgtagaaaacctgaaaaaggcgatagaggagtcaaaaaacaga
cctataaacaggcttatcacaggacttggtataagatttgttggaaaggttacagcaaga
acacttgcagagaatataaactgtgtagaggatcttaaagactggtctgttgaagatctt
gagagattacctgatgtgggatacgtagttgcgcacagtatatacgacttcttccataat
cctgacaacataaagatgatacaggaacttaaaaggttaggcgtacagacatgtaaggaa
aaagaggaggtcgtggaaaatatatttgaagggaaaacatttgtgtttacaggaactcta
tcgtgctgttcaagggagatagctcaggagatagttgagagacttggaggtcatgcatca
agttctgtaagcagaaagacaagctatgttgttgttggtgagaatcccggctcaaaatac
cgcaaagcattaagccttggcgttcagatccttgatgaaaaacagtttatagagatgata
aaagatcatatacctgatgacctgaaagataaagtacatctatga
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