Polynucleobacter necessarius: Pnec_0503
Help
Entry
Pnec_0503 CDS
T00683
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pne
Polynucleobacter necessarius
Pathway
pne03030
DNA replication
pne03410
Base excision repair
pne03420
Nucleotide excision repair
pne03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pnec_0503
03410 Base excision repair
Pnec_0503
03420 Nucleotide excision repair
Pnec_0503
03430 Mismatch repair
Pnec_0503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pne03032
]
Pnec_0503
03400 DNA repair and recombination proteins [BR:
pne03400
]
Pnec_0503
Enzymes [BR:
pne01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Pnec_0503
DNA replication proteins [BR:
pne03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Pnec_0503
DNA repair and recombination proteins [BR:
pne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Pnec_0503
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pnec_0503
MMR (mismatch excision repair)
DNA ligase
Pnec_0503
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Pnec_0503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Zn_ribbon_PF0610
Motif
Other DBs
NCBI-ProteinID:
ACB43767
UniProt:
B1XTU0
LinkDB
All DBs
Position
451972..453987
Genome browser
AA seq
671 aa
AA seq
DB search
MSSNSPTNLAERYAFLQAELARLEHAYYVLDNPLLPDIEYDRLYRELLDIEAVHPEWVTS
ESLSQRVGGAALKEFDSVTHAVPMLSLNNAFEDAELIAFDRRCREVLHAEHMAYAGELKF
DGLAISLRYENGLLVTAATRGDGASGEDVTANIKTIRAIPLKLTRKNIPQVLEVRGEVFM
YLKDFEKMNRQAAELGEKEFANPRNAAAGSLRQLDSKITAKRPLSFFAYGLGALEPQSWL
PKTHEELLNAYIELGLPVCSERKVLHSVQEILAFYSEIDDKRDSLPYDIDGVVYKVNSFA
EQAKLGFASRAPRFALAHKYPAQEALTTVLGIDVQVGRTGAITPVARLAPVEVGGVTVTN
ATLHNEDEIKRKDVRIGDTVSVRRAGDVIPEVVSVIKDRRPADAKEFQMPSRCPVCDSHI
ERLADEAVARCSGGLFCGAQRKQALIHFAHRRAMDIEGLGEKIVDQLVDQNLVRTPADLY
RLGFTALANLERMGEKSADNLIKAINQSRNTTLARFIFALGIRHVGETTAKDLANHYQSM
HALMDAGVEDLLTVKDVGPVVADSITSFMQEAHNREVIEQLLASGMRLAVEEKVISAAVA
GKTFVLTGTFPTMTRDEAKDLLEKAGAKVAGSVSKKTDYVVAGTDAGSKLTKAEELGVPV
IDEAAMLDLLK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgtctaatagtccgacaaatttagcggagcgttacgcattcttgcaagcagagctt
gcgcgcctagagcatgcttactatgtactcgataacccattactacctgatattgagtat
gaccgcctttatcgtgagttactcgatattgaagccgttcatcctgagtgggttacgtca
gaatccttatctcagcgggtaggcggggcagcattaaaagagtttgattcggtcactcat
gcagtgcccatgctctctttaaataatgcctttgaagatgcagaattaattgcttttgat
cgtcgttgccgtgaagtattacatgctgaacatatggcttatgccggggaactcaagttt
gatggcttggcgatttcactgcgttatgaaaatggcttattagtaactgcagctacccgg
ggtgatggtgctagcggtgaagatgttacggctaatatcaaaacaatccgtgctattcca
ctaaagctcactagaaaaaacattccacaagtcttagaagttcgcggtgaggtgtttatg
tacctcaaagatttcgagaaaatgaatcgacaagcggcggagttgggtgaaaaggaattt
gccaatccgcgtaatgccgcagctggcagtcttcgtcaattagattcaaaaattacggca
aagagaccactttcattctttgcctatggcttaggcgccctagaacctcagtcttggcta
cccaaaacccatgaagaattgctcaatgcctacattgaattgggtctaccggtttgttct
gagcgcaaagtactgcattctgtgcaggagatcttggctttttatagcgagatagatgac
aaaagagattcactgccgtatgacatcgatggtgttgtatacaaagtcaactcatttgct
gagcaagccaagctaggttttgcctcgcgcgcgcctagatttgcgcttgcccacaagtac
ccagcgcaagaagcgcttacaacggttttgggtattgatgtgcaagtagggcgcacgggt
gcgattacaccagtggcaagacttgctcctgtagaggtgggtggcgtcacagtcactaat
gcaaccttacacaatgaagatgagatcaagcgcaaagatgtgcgtattggcgataccgtt
tcagtgcgaagagcgggtgacgtgattcctgaggttgtttcagtgattaaagatcgccgt
ccagcagatgctaaagagtttcagatgccaagtcgttgccctgtttgtgactcacatatt
gagcgtctagccgatgaggctgtagctcgttgtagtgggggcttattttgtggtgctcaa
cgcaaacaagcgttaattcattttgcgcacagaagagcgatggatatcgagggcctaggc
gagaagattgtcgaccagctggtggaccaaaatctagttagaactcctgctgatctttat
cgcttgggatttactgcactcgcaaacctagagcgcatgggagagaagtcagctgataat
ctcattaaggcaattaaccagtccagaaacaccaccttagcccgatttatctttgcttta
ggtattcgtcatgtgggcgagacaactgcgaaagatttggcaaaccactatcagtcgatg
catgccttaatggatgcaggcgtggaggatttactcaccgttaaggatgttggccctgta
gttgcagactctattacaagcttcatgcaagaggcgcacaatcgtgaagtgattgagcag
ctcttagcgtctggaatgcggctcgctgtagaagaaaaagtcattagtgcggccgttgct
ggtaaaacttttgtcctcacaggcacattcccaacgatgaccagggatgaagcaaaagat
cttcttgaaaaagcgggtgccaaggttgctggatcagtttccaagaaaactgactatgta
gttgccggtacggatgcaggcagcaagcttactaaggctgaagaattgggtgtaccagtc
atcgatgaagcggcaatgctggatttacttaagtaa
DBGET
integrated database retrieval system
