Pseudoalteromonas nigrifaciens: PNIG_a1311
Help
Entry
PNIG_a1311 CDS
T05271
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
png
Pseudoalteromonas nigrifaciens
Pathway
png03030
DNA replication
png03410
Base excision repair
png03420
Nucleotide excision repair
png03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
png00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PNIG_a1311 (ligA)
03410 Base excision repair
PNIG_a1311 (ligA)
03420 Nucleotide excision repair
PNIG_a1311 (ligA)
03430 Mismatch repair
PNIG_a1311 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
png03032
]
PNIG_a1311 (ligA)
03400 DNA repair and recombination proteins [BR:
png03400
]
PNIG_a1311 (ligA)
Enzymes [BR:
png01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PNIG_a1311 (ligA)
DNA replication proteins [BR:
png03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PNIG_a1311 (ligA)
DNA repair and recombination proteins [BR:
png03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PNIG_a1311 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PNIG_a1311 (ligA)
MMR (mismatch excision repair)
DNA ligase
PNIG_a1311 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PNIG_a1311 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ASM53490
UniProt:
A0AAC9UFD0
LinkDB
All DBs
Position
I:1188635..1190674
Genome browser
AA seq
679 aa
AA seq
DB search
MFFEVKMASSISEQINHLRSTLEQHSYNYYVLDTPSIPDAEYDRLLQQLSALETQHPELI
TADSPTQKVGGAALSKFEQVAHQVPMLSLDNAFSEDEFIAFNRRIKERLMSTEELTFCCE
PKLDGLAVSIIYRDGVLVQAATRGDGLTGENVTQNVKTIRNVPLKLRGSDYPAELEVRGE
VFMDNAGFEKFNIEAEKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADG
SIAEDHYQQLEKLTDWGLPLCPETKLVEGPQAALAYYTDILTRRGELKYEIDGVVIKINQ
KALQERLGFVARAPRWAIAYKFPAQEEITKLLDVEFQVGRTGAITPVARLEPVFVGGVTV
SNATLHNGDEIARLGVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEFPVTCPICDS
HVEKVEGEAVARCTGGLVCPAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRELIKTPAD
LFILKQGHFESLERMGPKSAKNLVTALQDAKATTLAKFLYSLGIREAGEATTQNIANHFL
TLENVINASIDSLTQVSDVGEIVATHVRSFFSEQHNLDVVNALVEQGINWPELTPPSAQE
QPLAGLVYVLTGTLNTLNRNDAKARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDL
GIDVLTEEDLINLLEQHNG
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgttttttgaggtcaaaatggcaagcagcattagtgagcaaataaaccatcttcgtagt
acgcttgaacagcacagttacaattattatgtacttgatacccccagtattcctgatgct
gaatacgaccgtttattacaacaactcagcgcactagaaactcagcacccagaattaata
actgccgactcaccaacccaaaaagtgggcggtgctgcgctaagtaaatttgagcaagta
gcgcaccaagtgcctatgttatcgcttgataacgcctttagcgaagatgagtttattgcc
tttaatcgccgtataaaagagcgtttaatgagtaccgaagagcttactttttgttgtgag
ccaaaactagatggcttagctgtgtcgattatttatcgtgatggcgtactagtgcaagcc
gcgacccgaggtgatgggttgacgggagaaaatgtaactcaaaacgttaaaacaattcgt
aatgtgccacttaaattacgaggtagcgattatcctgctgaactagaagtgcgcggcgaa
gtgtttatggataatgcaggctttgaaaagtttaacattgaagctgaaaaacgtggtgaa
aaagtatttgtaaacccacgcaacgccgccgcaggtagcctgcgccagcttgactctaaa
attacggctaaacgcccactgatgttttatgcctacagcacaggtcttgtagccgacggt
agcattgcagaggatcattatcagcaattagaaaaattgactgattgggggttaccactt
tgccctgaaacaaaattagtagaaggcccacaagctgcactggcttattatactgatatt
ttaacgcgccgtggcgagcttaaatatgaaatagatggcgtggtaataaaaataaatcaa
aaagccttacaagagcgtttaggctttgtagcacgcgctccgcgttgggctattgcctat
aagtttccggcccaagaagaaataaccaaattactcgatgtagagtttcaggtggggcgt
acgggagcaattacacccgttgcacgcttagagccggtatttgttggtggtgttactgta
tcaaacgctaccttgcacaatggcgatgaaatagcgcgcttaggcgtaaaagtgggcgac
acggtaattattcgccgtgcaggggacgtaattccacaaataacgcaagtagtacttgag
cgccgccctgatgatgcccgcgatattgagtttccggtaacttgcccaatttgtgactcc
catgtagaaaaagtagaaggtgaagccgtagcgcgttgtactggtggtttagtgtgcccg
gcgcaacgtaaacaagcgattaaacactttgcatcgcgcaaagcactcgatattgacggc
cttggcgataaaattgttgatcaactcgtcgacagagagctgattaaaacccctgcagat
ttgtttattttaaagcaaggacattttgaatcgcttgagcgtatggggccaaagtcggct
aaaaatttggttactgcgcttcaagacgctaaagcgacaacgttggctaagtttttatac
tcattgggtattcgtgaagcgggtgaggcaaccacacaaaatatagctaatcatttctta
acccttgaaaacgtaataaatgccagcattgatagtttaactcaagtaagtgatgtgggc
gaaatagtagcaacccatgtacgtagctttttttccgaacagcataatttagatgttgta
aatgcgctggtagaacagggtattaattggcctgaacttactccaccttcagcgcaagag
cagccattagctggccttgtttatgtgcttaccggtaccttaaacacattaaaccgtaat
gacgccaaagcacgtttgcagcagttaggtgctaaagtgtcgggtagtgtgtcggctaaa
accgatgcgttagtagcaggcgaaaaggccggctctaaactaactaaggcacaagactta
ggtatagatgtactgacagaagaagatttaattaatttattagagcaacataatggctga
DBGET
integrated database retrieval system
