KEGG   Pseudodesulfovibrio nedwellii: SYK_08600
Entry
SYK_08600         CDS       T09024                                 
Name
(GenBank) hypothetical protein
  KO
K15022  formate dehydrogenase (NADP+) beta subunit [EC:1.17.1.10]
Organism
pnw  Pseudodesulfovibrio nedwellii
Pathway
pnw00680  Methane metabolism
pnw00720  Other carbon fixation pathways
pnw01100  Metabolic pathways
pnw01120  Microbial metabolism in diverse environments
pnw01200  Carbon metabolism
Brite
KEGG Orthology (KO) [BR:pnw00001]
 09100 Metabolism
  09102 Energy metabolism
   00720 Other carbon fixation pathways
    SYK_08600
   00680 Methane metabolism
    SYK_08600
Enzymes [BR:pnw01000]
 1. Oxidoreductases
  1.17  Acting on CH or CH2 groups
   1.17.1  With NAD+ or NADP+ as acceptor
    1.17.1.10  formate dehydrogenase (NADP+)
     SYK_08600
SSDB
Motif
Pfam: Pyr_redox_2 Fer4_20 Pyr_redox Pyr_redox_3 FeS NAD_binding_8 FAD_oxidored AlaDh_PNT_C Fer4 NAD_binding_7 DAO Fer4_7 Fer4_9 Fer4_6 Fer4_21 HI0933_like FAD_binding_2 GIDA Fer4_2 Amino_oxidase Fer4_10 FAD_binding_3 Thi4 Fer4_8
Other DBs
NCBI-ProteinID: BDQ36500
LinkDB
Position
897561..899663
AA seq 700 aa
MITASVLVLLGIGFTAAVILAVASKVLYVYEDPRIAQVESVLAGANCGGCGYPGCAGAAQ
GVVEGKAGATVCVIGGDQVATNVATIMGLEFSSMEKQIAFVDCTGGTRAEDVYIYEGAKD
CRAQHLLYSGSKMCPEGCLGYGTCVTACQFGAIEMGPNGYPVVDPNLCTACGGCEQVCPR
GVITIWGMTARIMHLNETTDCLAPCRQRCPGQINIPRYIEQVSRGDYAGALETIRERIPM
PLSIGRVCPHPCEDVCRRGHVDEPVGINMIKRFAADWEMNSGQRLPISCAPDTGRKIAVV
GGGPAGLSCAFSLRRLGHNPTIFESMPALGGQLRYGIPEYRLPKDILNWEIQGIIDLGID
VEYEKFFGTDFTLNSLKKDGYEAVFLGIGAWMNMTLRIENEEAKGVETGTEFLTKVGLGI
ETGINKKVVVIGGGNTAIDTARTGVRLGANVTLMYRRTRDEMPANIEEIIGAEEENVNYL
FLAAPTRIVTDDSDHVTHVEYIEMELGEPDDSGRRRPIPIEGSETLIEADTVYTAIGQKP
ELSCLYENGTCDLEETRWRTLGADSDTLQTALPHVFTGGDMHTGPALVITALGEGRKAAR
SIHQYLNEDAPHISANTQREMIDYTMFTNVPDVGLRDRSKMPNLIECDERTCTFKEIEGA
ISEAEAKHETCRCLRCGLTCYNRDLVDGQECIVDECVKNP
NT seq 2103 nt   +upstreamnt  +downstreamnt
atgatcacagcttccgtactcgtccttctcggcatcggctttaccgccgccgtcattctg
gccgtggcctccaaggtgctctatgtctatgaagacccacgcatcgctcaagttgaatct
gtccttgctggtgctaactgtggcggctgcggctatccaggttgtgcaggagctgctcag
ggcgttgtcgaaggcaaagccggcgccactgtctgcgtcatcggcggagatcaagtggct
acaaacgtcgcgaccatcatgggcctcgaattttcatccatggagaaacaaatcgccttt
gtggactgtacaggcggcactcgcgcagaagatgtttatatttatgaaggagccaaggac
tgccgcgctcagcacctactttacagcggctcaaagatgtgtcccgaaggttgcctcggc
tacggcacctgtgtaacagcttgccaatttggcgccattgaaatgggaccgaacggttat
ccggtcgtcgatccaaacctttgcactgcctgcggcggttgcgaacaggtctgcccacgc
ggcgtcataacgatatggggtatgaccgcacgcatcatgcacctcaacgaaaccacggat
tgtttggctccttgtcgccaacgctgccccggccaaatcaacatcccacgctatatcgaa
caagtttcacgcggcgactatgctggtgccttggaaaccatccgcgaacgcatccccatg
ccgctctccatcggacgcgtctgtcctcacccctgcgaagacgtttgtcgtcgtggccat
gtggatgagcctgtgggcatcaatatgataaaaagatttgccgcagactgggaaatgaac
tcgggacaacggcttcctatttcctgtgcgcctgatactggccgcaaaattgctgtagtc
ggcggcggcccagccgggctgtcctgtgcattttccctacgccgtcttggacacaaccca
actatcttcgaatccatgcccgcccttggtggccagcttcgttacggcatcccggaatac
cgattgccaaaggatatccttaattgggagatacagggtatcatcgatcttggcatcgac
gttgaatacgaaaagtttttcggtacagactttacgctgaactccttaaagaaagacggc
tatgaagcagtctttctcggaattggcgcatggatgaacatgactttacgcattgaaaac
gaggaagctaaaggtgttgaaaccggcacagaatttttgaccaaggtcggccttggcata
gaaaccggtatcaacaaaaaagttgtggtcatcggcggcggcaacacagccatcgacaca
gctcggaccggtgtccgactcggtgcaaatgtgactcttatgtaccgacgcactcgagat
gaaatgccagccaacatcgaagaaatcatcggtgcagaagaagaaaacgtcaactatctc
ttcttggctgcccccacacgcattgttaccgacgactccgatcacgtcactcatgttgaa
tatatcgaaatggaactgggggaacctgacgactcaggcagacgacgccccatacccatc
gaaggatctgaaacgctcattgaagccgataccgtatatactgccatcggccaaaagccg
gaactttcttgtctatacgaaaacgggacctgtgaccttgaagaaacacgttggcgcaca
ttaggcgccgattcagacactctccaaacagctctcccacatgtcttcaccggcggagac
atgcataccggccccgcacttgtgatcacggcccttggcgaaggcagaaaagcggctcgc
tcaatccatcagtatctcaatgaggacgctccgcatatctcagctaacacccaacgtgaa
atgatcgattacacaatgttcaccaacgtccctgatgttggcctgcgcgaccgctcaaaa
atgccaaacctcattgaatgtgatgaacgaacctgcaccttcaaagaaattgaaggtgca
ataagtgaagccgaagcaaaacatgaaacctgtcgctgtttgcgttgcggcctaacctgt
tacaaccgtgatcttgtcgacggacaggaatgtatcgttgatgagtgtgtgaaaaatccg
taa

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