Pseudodesulfovibrio nedwellii: SYK_18580
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Entry
SYK_18580 CDS
T09024
Symbol
cobDQ
Name
(GenBank) adenosylcobalamin biosynthesis bifunctional protein CobDQ
KO
K02232
adenosylcobyric acid synthase [EC:
6.3.5.10
]
Organism
pnw
Pseudodesulfovibrio nedwellii
Pathway
pnw00860
Porphyrin metabolism
pnw01100
Metabolic pathways
pnw01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00860 Porphyrin metabolism
SYK_18580 (cobDQ)
Enzymes [BR:
pnw01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.5 Carbon-nitrogen ligases with glutamine as amido-N-donor
6.3.5.10 adenosylcobyric acid synthase (glutamine-hydrolysing)
SYK_18580 (cobDQ)
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Gene cluster
GFIT
Motif
Pfam:
GATase_3
Aminotran_1_2
CbiA
AAA_26
SNO
GATase
Motif
Other DBs
NCBI-ProteinID:
BDQ37498
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Position
complement(2020984..2023665)
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AA seq
893 aa
AA seq
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MEKQTLFAGIPDMLDEQKYAHGGNVRRMAETAGCAPEDILDFSANVNPLGPPPWLGQVVG
QALQNVDSYPDPECHDLVMAASEKYKIWPTQVLPGNGASELLFAIAGMGQHRQAIIPSPT
YVDYARACKAHRLPIVEAGMTEDFQVDFPAMGSLLTTPSVVFLCSPNNPTGTMISPDDLR
EVAAMFPQSRFVVDASFSDFLPEDRDQLIRNRPANVITVLSLTKFYAIPGIRLGLAFADP
EIVLQIKQRMPAWSVNTLAQSVGIKCLCDTQYAAETREQTALLRESLASGLRNVPGIKVL
PGTANYLLCRVERIGQDAVMLRDKLLAEHHIGIRLCGNYTGLDDSWFRVAVRSQGENEQL
IKAMEAVSGTAKPPVVKRIKRTPALMLQGTSSNAGKSVLAAAFCRIFLQDGYNVAPFKAQ
NMSLNSYVTDQGGEMGRAQVTQAMACRLKPDVRMNPVLLKPGSDVGSQVIVMGQPVGNMA
VREYVEYKPRAWEAVKTAYDSLANEYDIMVLEGAGSPAEVNLKHHDIVNMAMAKYADARV
LLAGDIDRGGVFASMVGTMSLLTPMERSLVEGFLINRFRGDATLLEPAFGQMFEHTGKPV
LGTIPYIHSLGLPEEDSVSFKEGLLPDSVKFPDDECVEVVVVDLPRISNFNDIDPLFAEP
DVKVRVVTDARDVGTPDAIILPGSKSTVPDMKALKGTGMAAVLRELAGDGHKTRIVGICG
GFQMLGDIVDDPYGLESETTRVEGFGLLPVQTSLAPEKTLTRTWGVHSSSGQKVHGYEIH
HGQTTPLSEILRVALRNNNGEPLGYGRADGRIFGTYLHGLFDADEFRRWFIDQLRMDKGL
SPLEQVQTTFDLEDAIDNLASVVREAVCMDSIYKSLGLSGCCAQASLFYKLGG
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaacagacattatttgcggggattcccgatatgttggatgagcagaagtatgct
catggcgggaatgtgcggcgtatggccgagactgccgggtgtgcgcccgaggatattctt
gatttttccgccaatgtgaacccgcttggaccaccgccgtggctggggcaggtggtgggg
caggcgttgcagaacgtagattcgtacccggatccggaatgtcatgacttggtcatggcg
gcctctgagaaatacaagatttggcccacgcaggttttgccggggaacggtgcgtccgag
ttgttgttcgccatcgcgggtatgggccagcatcggcaggccattattccgtcacccacc
tatgtggattatgcgagggcatgtaaggcgcaccgactgcccatagttgaagccgggatg
accgaggattttcaggtggattttccggccatgggatcgctgctgaccacgccgtccgtg
gtttttttgtgcagcccgaacaatcccacgggtacgatgatttcgccggatgatttgcgt
gaggtcgcggccatgttcccgcaatcgcgttttgtggtggatgcttccttcagcgatttt
ctgcctgaagatcgagatcagcttatccgtaatcgaccggccaacgtcatcaccgttctt
tccctgaccaaattttacgccatccccggtattcggcttgggttggcctttgccgacccc
gagatcgtcttgcagatcaaacaacgtatgccagcatggtccgtgaacacgctggcccag
agtgtgggcatcaagtgcctctgcgacacgcagtacgccgccgagacccgtgaacagacg
gcgttgctccgtgagtcgcttgcctcgggactgcgaaacgtgccggggatcaaggtcttg
ccggggacagccaactacctgctttgtcgggtggagcgtatcgggcaggatgcggtcatg
ctccgtgacaaactgctggccgaacatcatataggtattcgtttgtgcggtaactacaca
gggttggacgacagttggttccgggttgctgttcggagtcagggcgagaatgaacagctg
atcaaggccatggaagcggtcagtggtacggcgaagcctccggtagtcaaacgtattaag
cgcactccggcgttgatgcttcaaggtaccagctccaatgcgggtaaatccgtgttggct
gcggcgttttgtcggatttttttgcaggacggctataatgtggctcccttcaaggcgcag
aacatgtcgctgaattcctatgtcacggatcagggcggagagatgggccgtgcacaggtg
acgcaggctatggcctgtcgattgaaaccggatgtgcgtatgaaccccgtattgctcaag
cccggttctgatgttggttcgcaggtgattgttatggggcagcctgtgggcaatatggct
gtgcgtgagtatgtggaatacaagcctcgcgcttgggaagctgtcaaaactgcttatgac
tcccttgccaacgagtatgacatcatggtgctcgaaggggcgggcagtcctgctgaagtg
aatttgaaacaccatgatattgtgaatatggccatggccaaatacgcggatgcgcgggta
ttgttggcaggtgatatcgatcggggcggcgtgtttgcgtccatggtcggcacaatgagc
ttgcttacacccatggaacggtcattggtggaaggctttctcatcaatcggttccggggt
gacgccaccttgctggagcctgcctttggccagatgtttgagcatacgggcaaacctgtg
cttggcaccattccgtatatccattcgctcggtttgcccgaagaggattccgtctccttc
aaggaagggctgcttcctgacagtgtaaaattccctgatgacgaatgtgtggaagtcgtc
gttgtggacctgccgcgcatatcgaatttcaatgacatcgacccgctgtttgccgagccg
gacgtcaaggtccgtgtggtaacggatgcccgcgatgtggggacaccggatgccattatt
ttgcctggttccaagtcgacagtgccggatatgaaagcactcaagggaactggcatggct
gcggtgttgcgtgagctggcaggcgacggacacaagacgcgcattgtcggtatatgcggt
ggatttcagatgctcggcgatattgtggatgacccgtatggccttgaatcagagaccact
cgtgttgaaggattcggcttgttgcctgtgcagacttcgctcgccccggaaaagacccta
acccgtacatggggggtacattcctcgtccggtcaaaaggttcacgggtatgaaattcat
catggtcagacaacgccgttgtctgaaattttgcgtgtggctttgcgcaataataacggc
gagccgttgggatacggcagggcggatgggcgtatattcggcacgtaccttcacggatta
ttcgatgcagatgagtttcgtcgttggtttattgatcagttgcgcatggacaaagggctg
tcgcctcttgaacaggttcaaaccacatttgacctggaagatgccattgataatttggcg
agtgttgtgcgtgaggccgtgtgcatggattccatctataagtcgttaggcttgagtggt
tgctgtgcccaggcaagtctgttttacaaactcggcggttga
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