Pseudodesulfovibrio nedwellii: SYK_27550
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Entry
SYK_27550 CDS
T09024
Symbol
ispDF
Name
(GenBank) bifunctional enzyme IspD/IspF
KO
K12506
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:
2.7.7.60
4.6.1.12
]
Organism
pnw
Pseudodesulfovibrio nedwellii
Pathway
pnw00900
Terpenoid backbone biosynthesis
pnw01100
Metabolic pathways
pnw01110
Biosynthesis of secondary metabolites
Module
pnw_M00096
C5 isoprenoid biosynthesis, non-mevalonate pathway
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
SYK_27550 (ispDF)
Enzymes [BR:
pnw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.60 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
SYK_27550 (ispDF)
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.12 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
SYK_27550 (ispDF)
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Motif
Pfam:
YgbB
IspD
NTP_transf_3
NTP_transferase
Motif
Other DBs
NCBI-ProteinID:
BDQ38395
UniProt:
A0ABM8B445
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All DBs
Position
complement(2991969..2993297)
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AA seq
442 aa
AA seq
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MNDDHPVRGDKTRLMTGSNLIYRAGKGAYLLPRDHFSFNGIGFRMTRPLKNIWGIILAAG
SGTRLAEAVNGERKQYLEYKSAPLFWHCARTFSRVARVKGLVFVFPPEDAPTMEKKLRQY
FKSEDLGLKWKVIPGGERRQDSVKNGLIGLPKECDGILVHDSARPFVSPRIITDLIDTLD
NGARGVIPTIPVTDTVKRVADDKVVDTLNRAELAAVQTPQGFETSILKEAHDRADAEGWE
VTDDASMVEKLAEVDVIPGETRNIKITVPEDLKRLEETKTTVPCMGWGYDVHRFGGENDR
PLTLGGVPIAGGPTIIAHSDGDVLLHALTDAILGTFGGGDIGKHFPDTDPKFKGVDSSIF
LREVLTMAEETGTRIVHADLTVITQAPRLSPHANQIAKNICRLLGLDAHQVNFKATTEEK
LGFTGAKKGIKAVASVTGLRDL
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatgaccaccccgtaaggggcgacaaaacccggcttatgaccggctccaacttg
atataccgcgcgggaaaaggcgcataccttctcccgcgcgaccacttttcattcaacggc
ataggttttcgcatgacgcgtccactcaaaaatatctggggcataatccttgccgcaggc
tccggtacaagactggctgaagccgtaaacggcgaacgcaagcagtacctcgaatacaaa
tcggcaccactgttctggcattgcgcccgaacattctcacgtgtagcccgcgtcaagggg
ctagtgttcgtcttcccgcccgaagacgctccgaccatggagaaaaaactccgccaatat
ttcaaatccgaagacctcggcctgaagtggaaagtcatccccggtggcgaacgccgtcag
gattccgtcaagaacggtctgatcggtctgcccaaggaatgcgacggtattctggtccac
gactcggctcgcccgttcgtatcacctcgaatcatcactgaccttatcgacaccctcgat
aatggcgcgcgcggtgtgatccctaccataccggtgacggacacggtcaaacgcgtggct
gacgataaggttgtcgacaccctgaacagggccgaactggccgcggtccaaactccgcag
ggattcgaaacatccattctcaaagaagcccatgaccgggctgatgccgaagggtgggaa
gtaacagatgatgccagcatggttgaaaagctggctgaagtggacgtgattcccggcgag
acacgcaacatcaagatcactgttcccgaggacctaaagcgtctggaagaaacaaagacc
actgtcccatgtatgggctggggctacgatgtccaccgctttggcggtgaaaatgatcgt
ccactgacacttggtggggttcccattgccggtggcccgaccatcattgctcactcagat
ggcgatgtactcctgcatgccctgacagatgccattctgggcactttcggtggcggagac
attggcaaacatttcccggacacggacccgaaattcaagggcgtggacagctctatcttt
ctgcgagaagttctgaccatggcagaagaaaccggaacgcgtatcgtccacgcggatctg
acggttattactcaagcgccgagactttccccgcatgcgaatcaaatcgcaaaaaacatc
tgccgtctcctcggactggatgctcatcaggttaacttcaaggccaccactgaagagaaa
ctcggctttaccggcgccaaaaaaggtatcaaggccgtagcttccgttacgggtctccgg
gatttgtag
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