Populus nigra (Lombardy poplar): 133674344
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Entry
133674344 CDS
T10372
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133674344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pnz03041
]
133674344
Spliceosome [BR:
pnz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
133674344
Complex C
U5 SnRNP specific factors
133674344
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Dynamin_N
Ras
TsaE
Septin
Motif
Other DBs
NCBI-GeneID:
133674344
NCBI-ProteinID:
XP_061951376
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All DBs
Position
15:12611734..12617261
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AA seq
989 aa
AA seq
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MDDNLYDEFGNYIGPEIESDRESDGEEEDEELPDKPHEDEEESDGEEAVHASNGWLTAPN
DVDMDNQVVLAEDKKYYPTAEEVYGPGVETLVNDEDEQPLEQPIIKPVRNIKFEVGVKDS
STYVSSQFLVGLMSNPSLVRNVALVGHLQHGKTVFMDMLVEQTHHTPTFDINSEKHIRYT
DTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLV
VDAAEGVMVNTERAIRHAIQEQLPIVVVINKVDRLITELKLPPKDAYHKLRHTIEVINNH
ISAVSSTAGNVQVIDPAAGNVCFAGATAGWSFTLHSFARLYLKLHGIPFDAEKFASRLWG
DMYYNPEDRTFKKKPPASGAERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAEFGVTLPN
SAYKLNVRPLLRLACSQVFGSASGFTDMLVKHIPSAKVAAARKVDHTYTGPKDSMIYQAM
LDCDPAGPLMVNVTKLYPKSDCSSFDAFGRVYSGKIMTGQSVKVLGEGYSPEDEEDMTVK
EVTKLWVYQARYRLPISMAPPGSWVLIEGVDASIMKTATLCNVNYNEEDVYIFRPLQFNT
LPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDL
RELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLEKGLAEDIENGV
VSIDWNRKALGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKGLLGAVKD
SIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMAT
PRLMEPVYYVEIQTPIDCLTAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFE
TDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMS
EDVSINKFFDEAMVVELAQQAADIHQQMM
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggatgacaatttgtatgatgagtttgggaactacattggtccggaaatagagtcagac
cgagagagcgatggtgaggaagaagatgaagaacttccagacaagcctcatgaagacgag
gaggaatctgatggtgaagaggcagttcatgcttccaatggttggcttactgcccctaat
gatgttgatatggataaccaagttgtccttgctgaggacaaaaagtactacccaaccgcg
gaggaggtttatggtccaggtgttgaaacgttagttaacgatgaagatgagcagcctctt
gagcaaccgataattaagcctgttaggaacatcaagtttgaggttggggttaaggattcc
tcaacttatgtttccagccagtttcttgttggtcttatgtcaaatccctctttggtacgc
aacgttgccctcgtgggccatctacagcatgggaagacagtttttatggacatgttggtt
gagcaaacacatcatacgccaacttttgatataaatagcgagaagcatattaggtacaca
gatacaaggattgatgagcaagaaagaaggatatctatcaaggcagttccaatgtcactt
gtccttgaggatagcaattcaaagtcatacctctgtaacatcatggacacccctggtcat
gtgaacttctctgatgaaatgactgctgccctcaggcttgctgatggtgcagtgttggtt
gtggatgctgctgaaggagtgatggtaaacacagagagagccatacgccacgcaattcag
gaacagctgcctattgttgttgtgatcaataaggttgacaggctcataacagagctcaaa
ttgcccccaaaggatgcgtatcacaagctaaggcataccatagaagtcattaacaaccat
atatctgctgtctcttcaactgctggaaatgttcaagtgatagatccagctgctggaaat
gtttgttttgctggtgcaaccgcaggatggtccttcactttgcattcctttgctagattg
tatctcaaactccatggtatcccatttgatgcggaaaagtttgcatctcgtctctggggg
gatatgtattataatcctgaggacaggactttcaagaagaaacctcctgctagtggagca
gaaagatcgtttgtccaatttgtgctggaacctctctacaaaatatacagccaagtgatt
ggagaacataaaaaaagtgttgaggctactcttgctgagtttggtgttactcttcctaat
tcagcttataaattaaatgtcaggcctttgctaagactggcttgcagtcaagtttttggc
tcagcctcaggtttcactgacatgcttgttaagcatataccttcggctaaggttgctgct
gccaggaaggttgatcatacatatactgggcccaaagattcaatgatttaccaggccatg
ctagactgtgatcctgctggccccttaatggttaatgtgacaaaattgtatccgaagtca
gattgcagttcatttgatgcttttggtagggtttatagtggtaaaattatgacagggcag
tctgtaaaagttttgggagaaggctattcaccagaggacgaggaggacatgacagtaaaa
gaagtgacaaaactatgggtatatcaagctcggtataggttacccataagtatggcacct
cctggttcctgggttctcattgaaggtgtggatgcttcaattatgaaaactgcaactctc
tgtaatgtgaattataatgaagaagatgtatacatatttcgacctcttcagttcaatact
cttccagtagtgaaaactgctaccgagcctctaaatccaagtgagttgcccaaaatggtg
gagggtcttaggaagatcagtaaaagctatcctctggccataactaaagttgaggagtct
ggggagcacactatacttggtactggagagttgtacttagattctattatgaaggacctt
agggagctatattctgaagtggaagtcaaggtagccgatcctgttgtctcattctgtgaa
actgtggtggagtcctcgtcaatgaaatgctttgctgaaacacccaacaagaagaataaa
ataaccatgatcgctgagccattggagaaagggcttgcagaagacattgaaaatggtgtt
gtaagcattgactggaatcggaaagctctaggtgacttcttcaagacaaaatatgattgg
gatttgcttgcagcacgatccatatgggcttttggccctgataagcagggacctaacatt
ttgctagatgacacacttccaactgaagtggacaagggattactaggtgccgtgaaggat
tctattgttcaagggtttcagtggggtgcacgagaaggaccactttgtgatgaaccaatc
agaaatgttaagttcaagatagtagatgctaggattgcgcctgaaccacttcatcgtgga
tctggtcaaataattccaacagctcggcgtgtggcctactcagcttttcttatggcaacc
ccaaggctcatggaacccgtatattatgtggagatacaaacaccaattgactgtctcact
gcaatctatacagtgttatctcgcagacgtgggcatgttacagcagatgttcctcagcct
gggactccagcttatattgttaaggcatttttacctgtcatagaatcatttggttttgag
acggacttgaggtaccatacccaaggtcaagcatttagcctctcggtgtttgatcattgg
gctatagtccccggagatccccttgataagagcattgttctgaggccacttgagcctgca
ccaatccagcaccttgcccgtgaatttatggtgaagacaaggcgtcgcaagggaatgagt
gaagatgtgagcattaacaagttcttcgatgaggctatggtggttgagctggctcagcaa
gcagctgatattcatcaacaaatgatgtga
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