Populus nigra (Lombardy poplar): 133682016
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Entry
133682016 CDS
T10372
Name
(RefSeq) E3 ubiquitin-protein ligase MIEL1
KO
K10144
RING finger and CHY zinc finger domain-containing protein 1 [EC:
2.3.2.27
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
133682016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pnz04121
]
133682016
Enzymes [BR:
pnz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133682016
Ubiquitin system [BR:
pnz04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133682016
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zinc_ribbon_6
zf-CHY
zf-RING_UBOX
zf-RING_2
zf-C3HC4
zf-C3HC4_2
zf-RING_5
zf-RING_4
CoiA_N
DUF8149
Motif
Other DBs
NCBI-GeneID:
133682016
NCBI-ProteinID:
XP_061961230
LinkDB
All DBs
Position
2:complement(39945528..39950479)
Genome browser
AA seq
275 aa
AA seq
DB search
MEEQNPASQSHRSTEQLQDTAKLEHQYGCEHYRRRCKIRAPCCNQIFSCRHCHNEATSSL
SNPKDRHEIVRHDIKQVICSVCNTEQEVAQVCNKCGVKMGEYFCDICKFYDDDTSKQQFH
CDSCGICRLGGRENFFHCEKCGSCYAIDMRDNHSCVENSMKNCCPVCYEYLFDSVKQATV
MKCGHTMHMDCFREMAKQQQYRCPICSKTVMNTSDYWKMLDEEIEAVQMPEQYQYEVSIL
CNDCNSTSKVAFHVVGHKCKQCASYNTRRIAGTGC
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atggaagagcaaaaccctgcttctcagtctcatagaagcacagagcagctacaagacacc
gcaaaattggaacaccaatatggatgcgagcactaccggagaagatgcaaaatccgagct
ccatgttgcaaccaaatcttttcttgccgccactgccataatgaagctaccagctcgctg
agcaatcccaaggatcgtcatgaaatagtcaggcacgatattaaacaagttatttgttca
gtttgcaacacagagcaagaggttgctcaggtttgcaataagtgtggtgtcaagatgggt
gaatatttttgtgatatttgcaaattctatgacgatgatacaagcaaacagcagttccat
tgtgatagttgtgggatttgtagactcggtggccgtgaaaatttttttcactgtgagaaa
tgtggatcttgctatgcaattgatatgcgtgataatcactcatgtgttgagaactccatg
aaaaattgctgtcctgtctgttacgagtatctttttgactcagttaaacaagcaacggtt
atgaagtgtggacataccatgcacatggactgctttcgtgaaatggcaaaacaacagcag
tatcgttgtccaatctgctccaagacagtgatgaacacctcagattattggaaaatgcta
gatgaggagattgaggctgtccaaatgcccgagcaataccagtatgaggtctccatcctc
tgcaatgactgcaacagcactagcaaagtcgcatttcacgttgttgggcacaagtgcaaa
cagtgcgcctcgtataatacccgaaggattgcaggaaccggttgctaa
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