Populus nigra (Lombardy poplar): 133687790
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Entry
133687790 CDS
T10372
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133687790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133687790
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133687790
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_15
Arf
AAA
AAA_30
AAA_23
SMC_N
ORC-CDC6-like
nSTAND3
Zeta_toxin
AAA_7
TsaE
AAA_28
Motif
Other DBs
NCBI-GeneID:
133687790
NCBI-ProteinID:
XP_061963098
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Position
3:complement(20499626..20502051)
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AA seq
328 aa
AA seq
DB search
MGDMEHQEPTIDINGLRFTYPGIDGHPPPGSKPLIDEFSLTLNSGDRCLLVGSNGAGKTT
ILKILGGKHMVEPQMVRVLGRSAFHDTALTSSGHLSYLGGEWRREVAFAGFEVPIQMDIS
AEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLRPFKVLLLDEI
TVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLEEWPTHILYVAHGKLQFALPMTK
IKETSNLSLMRTVESWLRKERDEERKRRQERKAGGLPEYEKQVEGSRVTGDPARVGARVM
NNGWAAGRLHSTIAGEENFFLSSNRVLR
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgggcgatatggagcatcaagaaccaacaatagatatcaacggcctgagattcacgtac
ccaggaatcgacggtcacccaccgcctgggtccaaaccgttgatcgatgagttctctctc
accctcaattctggtgatcgatgccttcttgttggatccaacggcgctgggaaaactaca
attctgaagatactaggaggaaaacacatggtggaaccccaaatggttcgtgttttagga
aggtctgcttttcacgacactgctttaacttcttctggtcatctttcttatcttggagga
gagtggaggcgagaagttgcttttgctggttttgaggttccgatacaaatggatatttct
gcggagaagatgatatttggggtggcaggtattgatcctcaaagaagagctgagctaatc
aaggtattggacattgatctgtcatggaggatgcacaaggtttctgatggccagagaagg
cgagtgcaaatttgcatgggtctcctgaggccattcaaggttcttcttcttgatgagata
acggttgacctcgatgtgctagcaagggctgaccttctgaagtttctaagaaaggaatgt
gaagagcgaggcgctacaattatctatgcaacacatatatttgatggtttggaggagtgg
ccaacgcatattttgtatgttgctcatgggaagttgcaattcgcattgccaatgaccaaa
ataaaagagactagtaatttgtcactaatgagaacagtggagagctggctgaggaaggaa
agagatgaggagaggaaaagaagacaagagagaaaggcaggaggtcttccagaatatgaa
aagcaggttgagggaagtcgagtgactggtgatccagctcgtgttggtgctcgtgttatg
aacaatggttgggctgcaggaaggctgcactccaccattgcgggtgaagagaacttcttc
ttgagctcaaacagggttttgagatag
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