Populus nigra (Lombardy poplar): 133691583
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Entry
133691583 CDS
T10372
Name
(RefSeq) ABC transporter I family member 19 isoform X1
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133691583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133691583
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133691583
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
ORC-CDC6-like
AAA_15
SMC_N
AAA_23
nSTAND3
AAA_24
AAA
AAA_28
AAA_30
NACHT
SRP54
AAA_22
Zeta_toxin
AAA_25
PduV-EutP
AAA_5
G-alpha
FtsK_SpoIIIE
ATP-synt_ab
AAA_33
AAA_7
AAA_14
Motif
Other DBs
NCBI-GeneID:
133691583
NCBI-ProteinID:
XP_061968133
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Position
4:complement(2412101..2415031)
Genome browser
AA seq
317 aa
AA seq
DB search
MTTQYLRTTTSICRAKKVKMAEKASQSIEKGENEKANSISICGMQFAYAGQHPLFYDFNL
NISPGSRCLLVGANGSGKTTLLKIMAGKHMVGGKDVVRVINGSAFHDTQLVCSGDLAYLG
GSWSKTVGSAGEIPLQGDFSAEHMIFGVEGTDPVRREKLIDLLDIDLQWRMHKVSDGQRR
RVQICMGLLHPFKVLLLDEVTVDLDVVARMDLLEFFKEECDQRGATIVYATHIFDGLETW
ATHLAYIQDGELRRAEKLTEVHELKSSANLLSVVESWLRYETKSEKKKPTNPPAQNQKTS
PLGSSPFMSSRHMAYYR
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgacaacacaatatctccgtacaaccacctcaatttgcagagcaaaaaaagtaaaaatg
gcagagaaagcttctcaatcaatagaaaaaggagaaaatgagaaggcaaacagtatcagt
atatgcggaatgcaattcgcatacgcaggacagcatccactcttctacgatttcaatctc
aacatctctcccggatctcgttgccttctcgtcggcgctaacggatccgggaagaccact
ttgctgaaaataatggcagggaagcatatggtaggagggaaagatgtggtgcgggtgata
aatggttcggcttttcatgatacgcaattggtttgtagcggtgacttggcttatttagga
ggttcttggagtaaaactgttggatctgctggagagattccactacagggcgacttctct
gcggaacatatgatatttggagttgaagggactgatcctgttagaagagaaaagttgatt
gacctgcttgacattgatctgcaatggcgaatgcacaaggtatctgatgggcagcggcga
agagtccagatttgcatgggtcttctccatccatttaaggttcttttacttgatgaagtt
acagtcgatctagatgttgttgccaggatggatttgcttgagttcttcaaggaagagtgt
gatcagagaggagctacaattgtatatgctactcatatttttgatgggttagagacttgg
gcaactcatctagcttacatacaagacggtgagctgaggagggctgagaagctaacggag
gttcatgagttgaaaagctcagccaatctgctttctgttgttgagtcttggcttcgctat
gaaaccaagagtgagaaaaagaaacccaccaaccctcctgcccaaaatcaaaagacctct
cctcttggtagttctcctttcatgtcatctagacacatggcatactaccgttga
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