Populus nigra (Lombardy poplar): 133693595
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Entry
133693595 CDS
T10372
Name
(RefSeq) ABC transporter I family member 19-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133693595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133693595
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133693595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
ORC-CDC6-like
SMC_N
AAA_15
nSTAND3
AAA
AAA_23
AAA_28
AAA_24
NACHT
AAA_22
Zeta_toxin
AAA_30
AAA_25
SRP54
nSTAND_NTPase5
G-alpha
AAA_33
PduV-EutP
AAA_5
AAA_14
Motif
Other DBs
NCBI-GeneID:
133693595
NCBI-ProteinID:
XP_061970823
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Position
5:complement(2252050..2254793)
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AA seq
299 aa
AA seq
DB search
MAEKASQSEGGGGENEKANSISICGMQFAYPGQHPLFYEFNLNISPGSRCLLVGANGSGK
TTLLKIMAGKHMVGGRDVVRVINGSAFHDTLLVCSGDLAYLGGSWSKTVGSAGEIPLQGD
FSAEHMIFGVEGTDPVRREKLIELLDIDLKWRMHKVSDGQRRRVQICMGLLHPFKVLLLD
EVTVDLDVVARMDLLEFFKEECDQRGATIVYATHIFDGLETWATHLAYIQDGELKRAKKL
TEVHELKNSATLLSVVESWLRSETKNEKKKPTNPPAQNQKTSPFGSSPFMSSRHMAYYR
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaaagcttctcaatcagaaggaggaggaggagaaaatgagaaggcaaacagt
atcagtatatgcggaatgcaattcgcatacccaggacagcatccactcttctacgaattc
aatctcaacatctctcctggatctcgttgccttctcgttggcgctaacggatctgggaag
acaactttgctgaaaataatggcagggaagcatatggtaggaggaagagatgtggtgcga
gtgataaatggttcggcttttcatgatactctattggtttgtagtggtgacttggcttat
ttaggcggttcgtggagtaaaactgttggatctgctggggagattccactacagggagac
ttctctgcagaacatatgatatttggagtggaagggactgatcctgttagaagagaaaag
ttaattgagctgcttgacattgatttgaaatggcgtatgcacaaggtgtctgatgggcag
cggcgacgagtccagatttgcatgggtcttcttcatccatttaaggttcttttgctagat
gaagttacagtcgatctagatgttgttgccaggatggatttgcttgagttcttcaaggaa
gaatgtgatcagagaggagctacaattgtatatgctactcatatttttgatgggttagag
acgtgggcaacacatctagcatacatacaagatggtgagctgaagagggctaagaagtta
accgaggttcatgagttgaaaaactcagccactctgctttctgttgttgagtcttggctc
cgttctgaaaccaagaatgagaaaaagaaacccactaaccctcctgcccaaaatcaaaag
acctctccttttggtagttctcctttcatgtcttctagacacatggcatactaccgctga
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