Populus nigra (Lombardy poplar): 133694362
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Entry
133694362 CDS
T10372
Name
(RefSeq) transcription factor PIF3-like isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04075
Plant hormone signal transduction
pnz04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
133694362
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
133694362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pnz03000
]
133694362
Transcription factors [BR:
pnz03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
133694362
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Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
133694362
NCBI-ProteinID:
XP_061971843
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Position
5:23758458..23763575
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AA seq
742 aa
AA seq
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MPLSELLYRMAKGKIDSSQEKDPSCSTDLSFVRPENDFGELIWENGQIQSSRARKIQPCS
TLPCQNPKFRYKDIGNGTDIRTGKFGMMESTLNELPMSVPAVEMGVNQDDDMVPWLNYPL
DESPQHDYCSEFLPELSGVTVNGHSSPSNFPSFGKKSFSQSVRDSRTVSVHNGLSLEQED
VAKDSSAGDTEANRPRTSASQLYLSSSEHCQTSFPYFRSRVSAKNGDSTSNAAHHVVSVD
SIRAPTSGGGFPSIKMQKQVPAQSTTNSSLMNFSHFARPAALAKANLQNFGMRAGTGISN
MERTQNRDKGSIASSSNPAECTPINSCSGLLKETNSHCLPVLMPPKVDAKPSEAKPAEGF
VPAELPEATIPEGDSTNDRNCRQNFCESAIKGVADVEKTKEPVVASSSVGSDNSVERASD
DPTENLKRKHRDTEESEGPSEDVEEESVGAKKQAPARAGNGSKRNRAAEVHNLSERRRRD
RINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPSMMLPPGMP
HMHAAHMGQFLPMGVGMGMRMGMGMGFGMSMPDVNGGSSGCPMYQVPPMHGPHFSGQPMS
GPSALHRMGGSNLQMFGLSGQGFPMSFPCAPLVPMSGGPPLKTNMEPNACGVVGAMDNLD
SATACSSHEAIQKINSQVMQNNVVNSSMNQTSSQCQATNECFEQPALVQNNAQDSGVADN
RALKSAGGNDNVPSSEAGEHMQ
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgcctttgtctgagctattatatcgaatggctaaaggaaagattgattcttctcaagag
aaggatcctagttgttcaactgatctgtcttttgtcagacctgagaatgactttggtgag
ctaatatgggaaaatggtcagattcaatccagtagagctagaaagatacaaccttgtagc
accttaccatgtcaaaaccccaagtttcgatataaagacataggaaatggcaccgatatt
agaacaggaaagtttgggatgatggagtctacactgaatgaactcccgatgtcagttccc
gctgttgaaatgggggtgaatcaagatgatgacatggtgccttggttgaattatccattg
gatgaatctcctcaacatgattattgttctgaatttttgcccgagttatctggtgttact
gtaaatggacactcctccccgagtaattttccgtcgtttggtaaaaaaagttttagccag
tcagttagggactcccgtactgtttctgtacataatggtttgagtttagagcaagaagat
gtggcgaaggattcttcagcaggggatactgaagctaataggcctagaactagtgctagc
cagttatatctatcatcttctgagcattgccaaacatcatttccatattttagatccaga
gtttcagctaaaaatggtgatagtacaagcaatgctgcccaccatgtcgtttcagtggat
tctattcgagctccaacatcaggaggtggttttcccagcataaagatgcagaagcaagtt
ccagcacaatccacaaccaactccagtttgatgaatttctctcattttgcaagacctgct
gctcttgcgaaagctaatcttcagaactttggcatgagagctggtacagggatttcaaac
atggaaagaacgcaaaatagagataagggctcaattgcaagtagtagcaatccggctgaa
tgcactcccattaattcatgtagtggtttgctaaaggaaacgaactcccattgtcttcct
gttctgatgccacccaaggttgacgctaaaccatcagaggctaagcctgcagaaggattt
gttcctgctgagctacctgaggctacaattccagaaggtgactcaacaaatgatagaaac
tgtcgtcaaaacttttgtgaaagtgcaattaaaggagtagcagatgttgagaagactaaa
gagcccgtggttgcttcttcttctgttggctcggacaatagtgtggagagagcttcggat
gatccaactgagaatctgaagagaaaacatcgagatactgaggagtctgaaggtcctagt
gaagatgtagaagaagaatctgtaggtgcaaaaaaacaagctcctgctcgagcaggtaat
ggctccaagagaaaccgggctgcagaagttcataatttatctgaaaggaggcgaagggat
aggatcaacgaaaagatgcgggccctacaagaactcataccaaactgtaacaaggtggat
aaagcttcaatgcttgatgaggccattgagtatttaaagacgcttcagcttcaagtacag
atcatgtcaatgggagctggattgtatatgccatcaatgatgttaccccctggaatgcct
cacatgcatgcagctcatatggggcagttcttacccatgggtgtgggaatgggaatgcgt
atgggaatgggaatgggttttgggatgagtatgccagacgtgaatggtggatcttctggt
tgccctatgtatcaagtgcctcctatgcatggaccgcatttctctggccagccaatgtct
gggccaagtgctttgcataggatgggaggatcgaatcttcagatgtttggcctttcaggt
caaggatttccaatgtcatttccctgtgcacccttagtgccaatgtctggagggcctcct
ctgaaaacaaacatggaaccaaatgcttgtggtgtggtaggtgctatggataatttggat
tctgctacggcctgtagttcacatgaagcaattcagaaaatcaactcgcaagtgatgcag
aataatgttgtcaatagctcaatgaatcagacctctagtcagtgccaggcaacaaatgaa
tgctttgaacaacctgctttggtgcaaaataatgctcaagactcaggagttgctgacaac
agagcattgaagtcggctggtggaaatgacaatgtaccaagtagtgaggctggtgagcat
atgcaataa
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