KEGG   Polaribacter sp. ALD11: CW731_00065
Entry
CW731_00065       CDS       T05264                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
poa  Polaribacter sp. ALD11
Pathway
poa03030  DNA replication
poa03410  Base excision repair
poa03420  Nucleotide excision repair
poa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:poa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CW731_00065
   03410 Base excision repair
    CW731_00065
   03420 Nucleotide excision repair
    CW731_00065
   03430 Mismatch repair
    CW731_00065
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:poa03032]
    CW731_00065
   03400 DNA repair and recombination proteins [BR:poa03400]
    CW731_00065
Enzymes [BR:poa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CW731_00065
DNA replication proteins [BR:poa03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CW731_00065
DNA repair and recombination proteins [BR:poa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CW731_00065
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CW731_00065
   MMR (mismatch excision repair)
    DNA ligase
     CW731_00065
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CW731_00065
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT BRCT_2 Nlig-Ia HHH Auto_anti-p27 5_3_exonuc
Other DBs
NCBI-ProteinID: AUC83793
LinkDB
Position
11552..13594
AA seq 680 aa
MSEEERIQQLRDELNNHNYNYYVLDNGTISDFDFDIKLKELEKLEAENIAFFDANSPTQR
VGGTVIKNFNTIVHKNRMYSLDNSYSKEDLFEWEKRVEKVLGTTALEFTCELKFDGASIN
LTYENGQFVKAVTRGDGFQGDDVSTNIRTIKSIPLNIKPDFVRDFEMRGEIILPLEGFIK
MNEERIENGEEEYRNPRNTASGSLKLQDSTEVAKRPLDCLLYQVVTSERKYKTHFESLEY
ARKVGFKVPKSIKLAKTIDEVYDFVNYWDVNRHELPYETDGIVIKVNNLQHQEELGYTAK
APRWAIAYKFKAEQVSTTLNEITYQVGRTGAITPVANLDPVQLAGTTVKRASLHNADQIE
KLDIREKDTVFVEKGGEIIPKIIAVDFTKRPEDSKPTIYATNCPECNTELVRTEGDAKHY
CPNEFGCAPQITGRIQHFISRKAMDIDGLGLETVDLLRKEGLIQNYADLYDLKVEQVIPL
ERMAEKSAQNMIYGIEKSKEIPFEKVLFALGIRFVGETVAKKLAKHFKSIDNLMTATFEE
LIKADEIGDRIAQSILDFSNNLGNIQLINRLKSYGLQLEVSAESLENQTDKLEGQVFVVS
GVFHQLSRNELKKAIEDNGGKVSSSISKKTNFIVAGDNMGPSKLTKAQDLGVSIISEQDF
IDKISCGLYLTQTAELKTEN
NT seq 2043 nt   +upstreamnt  +downstreamnt
atgagtgaagaagaaagaatacaacaacttcgtgatgagttaaacaaccataattacaac
tattatgtattagataacggaacaatttccgattttgatttcgacataaaactaaaagaa
ttagaaaaattagaggcagaaaatatcgcttttttcgatgcaaattcaccaacacaaaga
gtaggaggtactgttattaagaactttaatacaattgtgcataaaaacagaatgtattct
ttagataactcgtattcaaaagaagatttgtttgaatgggaaaaacgagtagaaaaagtt
ttaggaactacagcgttagaatttacatgtgaattaaaatttgatggtgcatctatcaat
ttaacttatgaaaacggtcagtttgtgaaagcggtaacacgtggcgatggttttcaagga
gatgacgtttcaacaaatattcgtacaataaaatcaattccattaaatataaaaccggac
ttcgtccgcgattttgaaatgcgaggagaaatcattttacctttagaaggtttcattaaa
atgaatgaagaacgtatagaaaacggagaagaagaatatagaaatcctagaaataccgca
agcggaagtttaaaattacaagacagtaccgaagttgcaaaaagacctttagattgtttg
ttgtatcaagtggtaacatcagaaagaaaatataaaacgcatttcgaaagtttagagtat
gctagaaaagttggtttcaaagttccaaaatctataaaactagcaaaaacgattgatgaa
gtgtacgattttgtaaattattgggatgtcaatcgtcatgagttaccttatgaaacagac
ggaattgtaataaaagtaaataatttacagcatcaagaagagcttgggtacacagcgaaa
gcacctcgttgggcaattgcatacaagtttaaagcggagcaagtttctacaacattaaat
gaaattacgtatcaggttggtagaacgggtgcaattacaccggttgcaaatttagatcca
gttcaattagcaggtacaacggtaaaacgagcgtctttgcacaatgcagatcaaatagaa
aaattagatattagagaaaaagatactgtttttgtagaaaaaggaggagagattattccg
aaaataatagcagtagattttacaaaacgtccagaagattcaaaaccaacaatctatgca
accaattgtccggaatgtaatacagaattggtaagaacagaaggtgatgcaaaacattat
tgcccgaatgaatttggttgtgcgccacaaataacaggaagaattcagcactttatttca
agaaaagccatggatattgatggtttgggattagaaacggtagatttattacgtaaagaa
ggtttaattcagaattatgcagatttgtacgacttaaaagttgaacaagtaattccgtta
gaaagaatggcagagaaatctgcacagaatatgatttacggaattgagaaatcaaaagaa
attccgtttgaaaaagtattatttgcactcggaattcgttttgtaggtgaaacagttgct
aaaaaactagcaaaacatttcaaatcgattgacaatctaatgacggcaacgtttgaagag
ttgattaaagccgatgaaattggagatcgaatagcgcagagtattctcgatttttctaat
aatttaggaaacattcaattaataaatcgtttaaaaagttacggattgcaattagaggtt
tcggcagaaagtttagaaaatcaaaccgacaagttagaagggcaagtttttgtggtttca
ggcgtttttcatcaactatctagaaacgaacttaaaaaagcaattgaagacaatggtgga
aaagtaagttcatcaatctctaaaaaaacaaattttattgttgcaggcgataatatggga
ccaagtaaattaacaaaagcgcaagacttaggcgtttcaattatttctgaacaagatttt
atagataaaattagttgcggtttatatctcactcaaacggctgaattgaaaactgaaaat
taa

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