Polaribacter vadi: LPB03_00075
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Entry
LPB03_00075 CDS
T04504
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pob
Polaribacter vadi
Pathway
pob03030
DNA replication
pob03410
Base excision repair
pob03420
Nucleotide excision repair
pob03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LPB03_00075
03410 Base excision repair
LPB03_00075
03420 Nucleotide excision repair
LPB03_00075
03430 Mismatch repair
LPB03_00075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pob03032
]
LPB03_00075
03400 DNA repair and recombination proteins [BR:
pob03400
]
LPB03_00075
Enzymes [BR:
pob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LPB03_00075
DNA replication proteins [BR:
pob03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LPB03_00075
DNA repair and recombination proteins [BR:
pob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LPB03_00075
NER (nucleotide excision repair)
GGR (global genome repair) factors
LPB03_00075
MMR (mismatch excision repair)
DNA ligase
LPB03_00075
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LPB03_00075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH_3
HHH
AphA_like
5_3_exonuc
Auto_anti-p27
RNA_lig_T4_1
HNOB
Motif
Other DBs
NCBI-ProteinID:
AOW15956
UniProt:
A0A1B8TP59
LinkDB
All DBs
Position
13178..15175
Genome browser
AA seq
665 aa
AA seq
DB search
MDIKERIDVLRAELDAHNYNYYVLDNATISDFDFDIKLKELEKLEKENPIFFDVNSPTQR
VGGSITKNFNTVVHQNRMYSLDNSYSKDDLLDWEKRIQKMLGTSEIEYTCELKFDGASIN
LTYENGQFIKAVTRGDGFQGDEVTNNIKTIRSIPLSIKKDFVKDFEMRGEIILPLDGFIK
MNEERVANDEEEYRNPRNTASGSLKLQDSSEVAKRPLDCLLYQVVTSERKYKTHFESLEN
ARKVGFKVPKTIAVAKNIEEVFDFVNKWDTKRHTLPYETDGVVIKVNNLQQQEELGYTSK
APRWAIAYKFKAEQVSTILNEITYQVGRTGAITPVANLEPVQLAGTTVKRASLHNADQIE
KLDIRENDTVFVEKGGEIIPKIIAVDITKRPISSTPTAYATNCPECNTELVRTEGDAKHY
CPNEFGCAPQITGRIQHFISRKAMDIDGLGGETVDLLRKEGLIKNYADLYDLKVEQVIPL
ERMAEKSAQNMISGIEKSKEIPFEKVLFALGIRFVGETVAKKLAKHFKSIDNLMSATFEE
LINVDEIGDRIAQSIIEFSSNEGNINLINRLKEVGVQLEVSAESLENQTNKLEGQIFVVS
GVFHQMSRNELKKAIEDNGGKVSSSISKKTNFIIAGDNMGPSKLTKAQDLGVTIISEQDF
IDKIS
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggatattaaagaacgaatagatgtattgagagcagagttagatgcacataattacaac
tattatgtgttagataatgcaacaatttcggatttcgattttgatataaaactcaaagaa
ttagaaaaattagaaaaggaaaatcctatttttttcgacgtaaattcgccaacacaaaga
gtaggaggtagcattaccaaaaattttaatacagttgtacatcaaaatagaatgtattct
ttggataattcttactcaaaagacgatttgttagattgggaaaagagaattcaaaaaatg
ttgggaacttcagaaattgaatatacgtgcgaattaaaatttgatggagcctctatcaat
ttaacgtatgaaaatggtcaatttataaaagcagttacaagaggagatggttttcaagga
gatgaggttacgaataatataaaaacgattcgctcaattcctttatcaattaagaaagac
tttgtaaaagattttgaaatgcgtggtgaaatcattttacctttagatggttttattaaa
atgaacgaagaacgtgttgcaaatgatgaagaagaatatagaaacccaagaaatacagcc
agtggaagtttaaaattacaagattcttctgaagttgcaaaacgacctttggattgttta
ttatatcaagttgtaacatcagaaagaaaatataaaacgcattttgaaagtttagaaaat
gcaagaaaagttggttttaaggttccaaaaacaattgctgtagcaaaaaacattgaggaa
gttttcgattttgtaaataaatgggacacaaaacgccacacgttaccttatgaaactgat
ggagttgttataaaagtaaacaatttacaacagcaagaagaattaggatacacatccaaa
gctccaagatgggcaattgcttataaatttaaagctgaacaagtttctacgattttgaac
gaaattacatatcaagttggtagaacaggtgcaattacgccagtcgcaaatttagaacct
gtgcaattggcaggaaccactgtaaaacgtgcgtctttgcacaatgcagatcaaattgaa
aagttagacattcgtgaaaatgatactgtttttgttgaaaaaggaggagaaattattcct
aaaattattgctgttgatattacaaaacgtccaataagttcaacaccaacagcttatgca
acaaactgtcctgaatgtaacacagaattagtaagaacagaaggtgatgcaaaacattat
tgtccaaatgaatttggttgcgctccacaaataacaggaagaattcagcatttcatcagc
agaaaagcgatggatattgatggtttaggaggtgaaactgtagatttattgcgtaaagaa
ggtttaataaaaaattatgctgatttatacgatttaaaggtggagcaagttattccatta
gaaagaatggcagaaaagtctgcacaaaacatgatttcaggaattgaaaaatcaaaagaa
attccgtttgaaaaagtactttttgccctcggaattcgttttgttggggaaactgtcgca
aaaaaattagccaaacattttaagtcaatagacaatttaatgtcagcaactttcgaggaa
ttaattaatgtggatgaaattggcgatagaattgcacaaagtataattgagttttcatcg
aatgaagggaacatcaacttaataaaccgtttaaaagaagttggagttcagttagaagtg
tctgctgaaagtttagaaaatcaaaccaataaattagaaggacagatttttgtagtttct
ggcgtttttcatcaaatgtctagaaacgaactgaaaaaagcgatagaagataatggaggt
aaagtgagttcatccatctctaaaaaaacaaattttattattgctggcgataatatgggc
ccatcaaaattaacaaaagcgcaagatttgggcgtaacaattatttcagaacaagatttt
attgataaaataagttaa
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