KEGG   Polaribacter vadi: LPB03_00075
Entry
LPB03_00075       CDS       T04504                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pob  Polaribacter vadi
Pathway
pob03030  DNA replication
pob03410  Base excision repair
pob03420  Nucleotide excision repair
pob03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pob00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LPB03_00075
   03410 Base excision repair
    LPB03_00075
   03420 Nucleotide excision repair
    LPB03_00075
   03430 Mismatch repair
    LPB03_00075
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pob03032]
    LPB03_00075
   03400 DNA repair and recombination proteins [BR:pob03400]
    LPB03_00075
Enzymes [BR:pob01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     LPB03_00075
DNA replication proteins [BR:pob03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     LPB03_00075
DNA repair and recombination proteins [BR:pob03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     LPB03_00075
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LPB03_00075
   MMR (mismatch excision repair)
    DNA ligase
     LPB03_00075
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      LPB03_00075
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT BRCT_2 HHH_3 HHH AphA_like 5_3_exonuc Auto_anti-p27 RNA_lig_T4_1 HNOB
Other DBs
NCBI-ProteinID: AOW15956
UniProt: A0A1B8TP59
LinkDB
Position
13178..15175
AA seq 665 aa
MDIKERIDVLRAELDAHNYNYYVLDNATISDFDFDIKLKELEKLEKENPIFFDVNSPTQR
VGGSITKNFNTVVHQNRMYSLDNSYSKDDLLDWEKRIQKMLGTSEIEYTCELKFDGASIN
LTYENGQFIKAVTRGDGFQGDEVTNNIKTIRSIPLSIKKDFVKDFEMRGEIILPLDGFIK
MNEERVANDEEEYRNPRNTASGSLKLQDSSEVAKRPLDCLLYQVVTSERKYKTHFESLEN
ARKVGFKVPKTIAVAKNIEEVFDFVNKWDTKRHTLPYETDGVVIKVNNLQQQEELGYTSK
APRWAIAYKFKAEQVSTILNEITYQVGRTGAITPVANLEPVQLAGTTVKRASLHNADQIE
KLDIRENDTVFVEKGGEIIPKIIAVDITKRPISSTPTAYATNCPECNTELVRTEGDAKHY
CPNEFGCAPQITGRIQHFISRKAMDIDGLGGETVDLLRKEGLIKNYADLYDLKVEQVIPL
ERMAEKSAQNMISGIEKSKEIPFEKVLFALGIRFVGETVAKKLAKHFKSIDNLMSATFEE
LINVDEIGDRIAQSIIEFSSNEGNINLINRLKEVGVQLEVSAESLENQTNKLEGQIFVVS
GVFHQMSRNELKKAIEDNGGKVSSSISKKTNFIIAGDNMGPSKLTKAQDLGVTIISEQDF
IDKIS
NT seq 1998 nt   +upstreamnt  +downstreamnt
atggatattaaagaacgaatagatgtattgagagcagagttagatgcacataattacaac
tattatgtgttagataatgcaacaatttcggatttcgattttgatataaaactcaaagaa
ttagaaaaattagaaaaggaaaatcctatttttttcgacgtaaattcgccaacacaaaga
gtaggaggtagcattaccaaaaattttaatacagttgtacatcaaaatagaatgtattct
ttggataattcttactcaaaagacgatttgttagattgggaaaagagaattcaaaaaatg
ttgggaacttcagaaattgaatatacgtgcgaattaaaatttgatggagcctctatcaat
ttaacgtatgaaaatggtcaatttataaaagcagttacaagaggagatggttttcaagga
gatgaggttacgaataatataaaaacgattcgctcaattcctttatcaattaagaaagac
tttgtaaaagattttgaaatgcgtggtgaaatcattttacctttagatggttttattaaa
atgaacgaagaacgtgttgcaaatgatgaagaagaatatagaaacccaagaaatacagcc
agtggaagtttaaaattacaagattcttctgaagttgcaaaacgacctttggattgttta
ttatatcaagttgtaacatcagaaagaaaatataaaacgcattttgaaagtttagaaaat
gcaagaaaagttggttttaaggttccaaaaacaattgctgtagcaaaaaacattgaggaa
gttttcgattttgtaaataaatgggacacaaaacgccacacgttaccttatgaaactgat
ggagttgttataaaagtaaacaatttacaacagcaagaagaattaggatacacatccaaa
gctccaagatgggcaattgcttataaatttaaagctgaacaagtttctacgattttgaac
gaaattacatatcaagttggtagaacaggtgcaattacgccagtcgcaaatttagaacct
gtgcaattggcaggaaccactgtaaaacgtgcgtctttgcacaatgcagatcaaattgaa
aagttagacattcgtgaaaatgatactgtttttgttgaaaaaggaggagaaattattcct
aaaattattgctgttgatattacaaaacgtccaataagttcaacaccaacagcttatgca
acaaactgtcctgaatgtaacacagaattagtaagaacagaaggtgatgcaaaacattat
tgtccaaatgaatttggttgcgctccacaaataacaggaagaattcagcatttcatcagc
agaaaagcgatggatattgatggtttaggaggtgaaactgtagatttattgcgtaaagaa
ggtttaataaaaaattatgctgatttatacgatttaaaggtggagcaagttattccatta
gaaagaatggcagaaaagtctgcacaaaacatgatttcaggaattgaaaaatcaaaagaa
attccgtttgaaaaagtactttttgccctcggaattcgttttgttggggaaactgtcgca
aaaaaattagccaaacattttaagtcaatagacaatttaatgtcagcaactttcgaggaa
ttaattaatgtggatgaaattggcgatagaattgcacaaagtataattgagttttcatcg
aatgaagggaacatcaacttaataaaccgtttaaaagaagttggagttcagttagaagtg
tctgctgaaagtttagaaaatcaaaccaataaattagaaggacagatttttgtagtttct
ggcgtttttcatcaaatgtctagaaacgaactgaaaaaagcgatagaagataatggaggt
aaagtgagttcatccatctctaaaaaaacaaattttattattgctggcgataatatgggc
ccatcaaaattaacaaaagcgcaagatttgggcgtaacaattatttcagaacaagatttt
attgataaaataagttaa

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