Paenibacillus odorifer: PODO_28030
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Entry
PODO_28030 CDS
T03326
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pod
Paenibacillus odorifer
Pathway
pod03030
DNA replication
pod03410
Base excision repair
pod03420
Nucleotide excision repair
pod03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PODO_28030
03410 Base excision repair
PODO_28030
03420 Nucleotide excision repair
PODO_28030
03430 Mismatch repair
PODO_28030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pod03032
]
PODO_28030
03400 DNA repair and recombination proteins [BR:
pod03400
]
PODO_28030
Enzymes [BR:
pod01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PODO_28030
DNA replication proteins [BR:
pod03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PODO_28030
DNA repair and recombination proteins [BR:
pod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PODO_28030
NER (nucleotide excision repair)
GGR (global genome repair) factors
PODO_28030
MMR (mismatch excision repair)
DNA ligase
PODO_28030
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PODO_28030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
DNA_ligase_ZBD
DUF669
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AIQ76748
LinkDB
All DBs
Position
complement(6209060..6211072)
Genome browser
AA seq
670 aa
AA seq
DB search
MDAMHVMEELVAELNNYNYHYYTLDAPLVSDKEYDVLYDKLVALEAESGFVLPDSPTQRV
GGELLKGFTPHRHLAPLWSLDKAQNIEQLRSWNTRVLRLVNEYNLKNPDNPLPDPCYAVE
LKFDGLTLNLTYRNGVLEQASTRGNGVVGEGILAQVKTIKSVPLTIPFKDGVIEVQGEGI
MNLSVLADYNTRATEPLKNARNAAAGALRNLNPKTTADRRLNAFFYNVGFAEGAEFADHQ
EMMDFLRNNKFKVNPYLTYCNDFDDVTEQLAGIEESRSSLDYLIDGAVIKITDFRIREVL
GYTDKFPRWAVAYKFEAEETTTVLESVSWNVGRTGKVTPLARVEAVELAGVTVQNCTLNN
VGDIERKNLKFALGSRVFIRRSNDVIPEILGKVTEENDGGEIIFPEDCPACGYPLEMRGA
HLFCNNKLNCRPQIISRITHFASRDAMDIETFSEKTAGQLYDELNVHDSADLYELNFEQL
VQLNRFGEKKAQNLLQALEDSKGRDLASFLFALGIPNTGKATTKMLADHFRDLDAVMQAK
AEELAELPDIGGIVAESIVSFFADPVVVANVSRLRALGVEAKAPEAPRPVNTDSFFSGKT
VVLTGSLQKLTRDEAAERLEALGAKVSGSVSKKTDLVIAGEKAGSKLAKAQQLGIQVIED
EDELIRLLDM
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggatgctatgcatgtgatggaagagcttgttgcggaattaaataattataattaccac
tactacacgctggatgcaccgctagtcagcgataaggaatacgatgttttatacgacaag
cttgtagcactggaggctgagagtggcttcgtgctaccagattcgcctacacaacgtgta
ggtggagagctgcttaagggcttcacgccgcatcggcatctggcaccgctttggagtctg
gataaagcacagaatattgaacagctgcgcagctggaatacccgggtgctccggttagtg
aatgaatacaatcttaagaatccagacaaccctcttcctgatccttgttatgcagtagaa
ctgaagttcgatggcttaacgctgaatttaacctatcgtaatggtgttctcgaacaggca
tcgacgcgtggcaatggtgtagttggcgaaggaatacttgcacaggtgaagaccatcaaa
tccgttccattgacgattcccttcaaggatggggtcattgaggttcagggtgaagggatt
atgaatctgtctgtgctggctgattataatacaagggctacagagccgctgaagaatgcg
cgtaatgcagcagcaggtgcactgcgtaatcttaatccgaagactactgcggaccgccgt
ttgaacgcttttttctataatgtaggctttgcagaaggtgcggagttcgctgatcatcag
gaaatgatggattttctgcggaataacaaatttaaagtgaacccatacctgacctactgc
aatgattttgatgatgtaactgagcagcttgctggaatcgaggagagtcgttcgagtctc
gattacctcattgatggggctgtaattaagatcacggatttcagaatccgtgaggtgctt
ggatacactgacaagttcccacgttgggcagtagcttataaatttgaagccgaagaaacg
acgaccgtgctggagtctgttagctggaatgtaggtcgtacaggtaaagtgactccgctg
gctcgggttgaggctgtagagcttgctggagttaccgttcagaactgcaccctgaataat
gtgggtgatattgagcgcaaaaacttgaaattcgccttaggttcgcgggtctttattcgc
cgttccaatgatgttatcccagaaattctcggcaaggtaacagaggagaatgacggtgga
gagattattttccctgaggattgtccagcttgtggatatccgttagaaatgcgcggagca
catcttttctgtaacaataaactgaattgtaggccgcagattatcagtcggatcacccac
tttgcttcgcgtgatgcgatggatattgagacattcagtgagaagacggcgggtcagctc
tatgatgagcttaatgtgcatgactctgcggatctgtatgaactgaactttgagcagctc
gtacagctgaaccgttttggtgagaaaaaagcacagaatttgctgcaagctttagaagat
agcaaaggtagagatcttgcttcatttctctttgcgttagggatccctaacacaggtaaa
gcaacgacgaagatgttggctgatcatttccgcgatctggatgctgtgatgcaggccaaa
gccgaggagctcgctgagttaccagacattggtgggattgtcgccgagagcattgtcagc
ttcttcgcagatccagttgtagtagctaatgtttcccgcttgcgggcgttgggtgtggaa
gcgaaggctcctgaggcaccacgtcctgttaataccgattccttctttagtggcaaaacg
gtcgtattgaccggttccttgcaaaagcttacccgagatgaagcagctgaacgtctggaa
gcacttggagcaaaggtgtctggaagtgtgtccaagaagacggatttagttatcgctggt
gaaaaagctggcagtaagctggctaaagctcagcagttaggcattcaggtcattgaggat
gaagatgagctaattcgcttgttggatatgtaa
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