Polynucleobacter paneuropaeus: DPM16_00885
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Entry
DPM16_00885 CDS
T05507
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
poh
Polynucleobacter paneuropaeus
Pathway
poh00300
Lysine biosynthesis
poh00550
Peptidoglycan biosynthesis
poh01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
poh00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
DPM16_00885
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
DPM16_00885
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
poh01011
]
DPM16_00885
Enzymes [BR:
poh01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
DPM16_00885
Peptidoglycan biosynthesis and degradation proteins [BR:
poh01011
]
Precursor biosynthesis
Amino acid ligase
DPM16_00885
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
PTS_EIIB_BC_N
Motif
Other DBs
NCBI-ProteinID:
AWW43907
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Position
152000..153538
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AA seq
512 aa
AA seq
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MRVAVHIEPNHLIEHLQKLVAPAAKIRSDSRQIKLGDIFFAYPVGHGKALRDGRLFIAAA
LESGAKAVVYDPINLNDQFEDHPQCFAVENLAKHAGFLSAQWYGNPSRDLNVIGVTGTNG
KTSITQWIAQALDTPSQRAAVIGTLGAGLSGSLIQTGYTTPDAPTLQTQISELRDQGAKQ
LAIEVSSHALDQGRIAGLDISCAVFSNLTQDHLDYHANMTEYAQAKAKLFNQSALKDVVL
NMDDPFGRELAMQALAKNVVKVWGYALEQSAFQGFEKFGDRLHQLYAKDLVLAGNGYDAS
FIYEGKGSEKLHIPVIGEFNVSNCLAVWGVLLSQGLTISEASKRVSHLKPVIGRMELIHS
NKTGPLVIVDYAHTPDALEKVLKTLRPIADERQGRLWCVFGCGGDRDVGKRPQMGGVAEQ
FSDEVIITSDNPRSEDPNEIIAMINSGMTTQTKQAQIIVDRAAAIMAAVRHATEADIVLV
AGKGHESTQEINGKKFDFSDQEHILLAAGGAI
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgagggtggcagtgcatatagaacccaatcacttgattgagcatttacaaaaattggta
gcacctgccgccaagattagaagtgatagtcgacaaatcaaacttggcgatatctttttt
gcctatcccgttggtcatggcaaagcattgcgagatggtcggctatttattgccgcagct
cttgaaagtggtgcaaaggcagttgtttatgatccgatcaatctgaatgatcaatttgaa
gatcatcctcagtgctttgcagttgagaatttagcaaaacacgccggatttttaagtgca
cagtggtatggcaatcctagccgcgatctgaatgtgattggggttactggtaccaatgga
aagacgagcattacccagtggattgctcaggcgctagataccccttctcagcgcgctgca
gtgattggtacgctaggagcaggattgtcaggctccttaattcagacggggtataccacc
ccggatgccccgacactacagactcagataagtgagttgcgtgaccaaggcgcaaaacaa
ttggctatcgaagtttcctctcatgctttagatcaaggccgaattgcgggattagatatt
agctgcgcagtatttagtaatttgacgcaagatcatttggactaccacgccaatatgact
gagtatgctcaagcaaaagcaaagttatttaatcagagcgccctcaaggatgtcgttttg
aatatggacgatccctttggaagagagcttgcaatgcaggcacttgcgaagaatgtcgta
aaagtttggggctatgcattagagcagagcgcttttcagggctttgaaaaatttggtgat
cgcttgcatcaactgtatgcaaaagatttagtgttagccggaaatggctatgatgcctca
ttcatttacgaaggtaaggggtctgaaaagctacatattcccgtcattggtgaatttaat
gtcagtaattgtttggcagtctggggagtcttgttaagtcaaggtttaacaatctcagaa
gctagtaagcgagttagtcacttaaagcccgtcatcggtcgcatggagttaattcattcc
aataaaactgggccattagtaattgttgattatgcgcatacaccggatgccttagaaaaa
gttctaaaaaccttgcggcctattgctgatgaacgtcaggggaggctctggtgcgtattt
ggttgtggtggcgatcgtgatgttggtaaacggcctcagatgggaggggttgcagagcaa
ttttctgatgaagtaattattaccagcgataaccccagatcagaagatccaaatgaaatc
atcgccatgatcaactctggaatgactacccagaccaaacaagcacaaatcattgtcgat
cgggctgcagcaattatggctgctgtgcgccatgcaacagaagcagacattgttttagtt
gccggtaagggtcatgaatctacgcaagaaatcaatggtaaaaaatttgatttctcagat
caagagcatatcctcttggcagcaggaggagcgatctaa
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