Polynucleobacter paneuropaeus: DPM16_02890
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Entry
DPM16_02890 CDS
T05507
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
poh
Polynucleobacter paneuropaeus
Pathway
poh03030
DNA replication
poh03410
Base excision repair
poh03420
Nucleotide excision repair
poh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
poh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DPM16_02890 (ligA)
03410 Base excision repair
DPM16_02890 (ligA)
03420 Nucleotide excision repair
DPM16_02890 (ligA)
03430 Mismatch repair
DPM16_02890 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
poh03032
]
DPM16_02890 (ligA)
03400 DNA repair and recombination proteins [BR:
poh03400
]
DPM16_02890 (ligA)
Enzymes [BR:
poh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DPM16_02890 (ligA)
DNA replication proteins [BR:
poh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DPM16_02890 (ligA)
DNA repair and recombination proteins [BR:
poh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DPM16_02890 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DPM16_02890 (ligA)
MMR (mismatch excision repair)
DNA ligase
DPM16_02890 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DPM16_02890 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
FrhB_FdhB_C
Motif
Other DBs
NCBI-ProteinID:
AWW44267
LinkDB
All DBs
Position
555135..557150
Genome browser
AA seq
671 aa
AA seq
DB search
MSSNRPMNLADCYAFLQKELARLEHAYYVLDAPLLPDIEYDRLYRELLEIEAAHPEWITS
ESLSQRVGGAALKEFDSVEHVVPMLSLNNAFEDAELIAFDRRCREGLNVKQVDYAGELKF
DGLAISLRYENGSLVRAATRGDGASGEDVTANIKTVRAIPLRLLGKNIPAVLEVRGEVFM
YLEDFLKMNQLAAAQGEKEFANPRNAAAGSLRQLDSKITAKRPLSFFAYGLGALEPQGWL
PATHEELLNRYVDLGLPVCTERKVLKSVEDMLAFYHEIEAKRDSLPYDIDGIVYKVNSIA
EQNTLGFVSRAPRFALAHKFPAQEALTTVLGIDVQVGRTGAITPVARLAPVEVGGVTVTN
ATLHNEDEVKRKDVRIGDTVTVRRAGDVIPEVVSVIKERRPKSATEFVMPSRCPVCDSHI
ERLADEAVARCSGGLFCGAQRKQALIHFAHRRALDIEGLGEKIVDQLVDQNLVRTPADLY
RLGFSALANLERMGEKSADNLIQAINQSRNTTLARFIFALGIRHVGETTAKDLANHYQSM
HALMDASLEDLLTVKDVGPVVADSIVSFMEEAHNREVIEQLLASGMQLSVEKKVISAAVA
GKTFVLTGTFPSLSRDQAKDLLEKAGAKVAGSVSKKTDYVVAGTDAGSKLSKAEELGITV
IDEQAMLDLLG
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgtctaatcggccgatgaatctcgcggattgttacgcctttttgcaaaaagagcta
gctcgactggagcatgcttactatgttctcgatgctccgctattgcccgatattgaatac
gatcgcctctatcgagaattattggagatagaggcagcccatcctgagtggatcacttca
gagtcactgtcccagcgggttggtggggctgccctcaaagaatttgattcggtagagcac
gtggtgccgatgctctctctcaataatgcttttgaagatgctgaattgattgcttttgat
cgccgctgtagagaggggttgaatgtcaagcaagtggactatgctggcgagttgaaattt
gatggccttgcgatctcattgcgctatgaaaatggctctttagttcgagccgcaacgaga
ggtgatggtgcaagtggtgaagatgtcacagcaaatatcaaaacagttcgtgcgattccc
ttgcggctcctaggtaaaaatattccagctgttttagaggtgcgcggtgaagtcttcatg
tatttagaggatttcctgaaaatgaatcaactggcagctgcgcagggcgagaaagagttt
gccaatcctcgtaacgcagctgcgggtagcttaagacagttggattcgaagatcaccgct
aaacgtccactgtctttctttgcttatggtctgggtgccttggagccgcaggggtggctt
cccgcaactcatgaggagttactcaatcgctatgttgatttaggcttaccagtatgtaca
gaacgaaaagtcctgaaatcggtagaagacatgctcgctttttatcatgagattgaggct
aagcgtgattctttgccttacgacatcgatgggattgtctacaaggtcaattctattgct
gagcaaaacacactcggctttgtctcaagagcgccccgttttgctctagcgcataaattt
cctgctcaagaggccttaacaactgtcttgggtattgatgttcaggtgggccgcactgga
gccattactcccgtcgctcgattggctcctgtagaggtagggggtgtcaccgtcacgaat
gccaccttacacaatgaggatgaggtcaaacgcaaggatgttcgcattggggatactgtt
actgtgcggcgagcaggtgatgtgattcctgaagtggtgtccgtcattaaggagcgacgc
cctaaaagtgcgactgaattcgtaatgccaagtcgatgcccggtatgcgactctcatatt
gagcgcttagcagatgaggcagtagcgcgttgtagtggtggcctattttgtggggcacag
cgtaagcaggcattaattcattttgctcacagaagggcgctcgatattgagggcctcggt
gaaaagattgtcgatcagttggttgatcagaacttagtgagaactcccgcagatctttat
cgcctaggtttttctgctctagccaatttagagcgtatgggtgaaaagtctgccgataat
ttaattcaggcgatcaaccaatcacgcaatacgactttggccagattcatctttgcttta
ggtattcgtcatgtcggtgagactactgccaaagatttggctaatcattaccagtcgatg
catgctctgatggatgctagcttggaagatttactcactgtgaaagatgtaggtcctgta
gtagcagattctattgtgagcttcatggaggaagcccataatcgagaagtaatcgagcag
cttctagcatcaggcatgcaactctccgttgaaaagaaagtgatcagcgctgcagtagca
ggaaaaacgtttgtgcttaccggaacttttccaagcttgagtcgtgatcaagctaaagac
ctgcttgaaaaggcgggcgcaaaggtcgctggctcggtctccaaaaaaacagattatgtt
gtcgcaggtacagacgctggtagcaagctaagcaaagcagaagagttgggtattacagtc
attgatgagcaagcgatgctcgacttactaggttga
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integrated database retrieval system
