Metapseudomonas otitidis: PtoMrB4_19990
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Entry
PtoMrB4_19990 CDS
T06890
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
poj
Metapseudomonas otitidis
Pathway
poj03030
DNA replication
poj03410
Base excision repair
poj03420
Nucleotide excision repair
poj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
poj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PtoMrB4_19990 (ligA)
03410 Base excision repair
PtoMrB4_19990 (ligA)
03420 Nucleotide excision repair
PtoMrB4_19990 (ligA)
03430 Mismatch repair
PtoMrB4_19990 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
poj03032
]
PtoMrB4_19990 (ligA)
03400 DNA repair and recombination proteins [BR:
poj03400
]
PtoMrB4_19990 (ligA)
Enzymes [BR:
poj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PtoMrB4_19990 (ligA)
DNA replication proteins [BR:
poj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PtoMrB4_19990 (ligA)
DNA repair and recombination proteins [BR:
poj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PtoMrB4_19990 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PtoMrB4_19990 (ligA)
MMR (mismatch excision repair)
DNA ligase
PtoMrB4_19990 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PtoMrB4_19990 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
BCA28022
UniProt:
A0A679GFZ2
LinkDB
All DBs
Position
2158613..2160985
Genome browser
AA seq
790 aa
AA seq
DB search
MNDTSGNAAQRIQALRAELDEHNYRYYVLDEPSVPDAEYDRLFRELQALEAEHPELVTPD
SPTQRVGGEALSAFGEVRHEVPMLSLGNAFEEEDLLAFDRSVQSGLGLSGGDLFGGGAAV
EYSCEPKLDGLAVSLLYRNGVLERGATRGDGATGEDISANVRTIRNVPLKLKGEGWPQVL
EVRGEVYMPKAGFEELNARQAESGGKTFANPRNAAAGSLRQLDPKITASRPLEFCCYGIG
QVSAELAPTQVGMLERLKGWGIPISRELRLAKGVEACLDYYRDIGQRRMALPYDIDGVVF
KVNTLEDQQQLGFRARTPHWAIAHKFPAQEELTELLDVEFQVGRTGAVTPVARLKPVKVA
GVTVANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVMQVVAERRPADARPVHVPEQCP
VCGSAVERTQLVKRAKGKATTSEGSVYRCVGRLACGAQLKQAIIHFASRRAMDIDGLGDK
IVEQLVDTGLVASPADLYTLTYEQVVELEGFADLSTRNLLAAIQDSAKPTLARFIFALGI
PDVGEETAKLLARALGSLKRLEQALPEVLTYLPDVGLEVASEIHNFFGDDHNRQVIADLL
ARGVVLQDEGEVSAEFTACASLGGFLDKLNIPGIATTGAEKLAARFGSLQGVIQADWLDL
RQVERLNEKAARSLRDFFDEPANREHALRIEAQLLEFGMHWSCERKVVEGLPLAGQTWVL
TGTLEAMSRDQAKDKLEALGAKVAGSVSARTHCVVAGPGAGSKLAKATELGLRVLDEEQF
LAELKTLGAA
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacacatcaggcaatgccgcccagcgcatccaggcactgcgtgccgaactggat
gagcacaactaccgctactacgtcctcgacgagcccagcgtgcccgacgccgagtacgac
cgcctgttccgcgagctgcaggccctggaggccgagcacccggaactggtcacccccgat
tcgcccacccagcgtgtcggcggcgaggccctcagcgctttcggcgaggtgcgccacgaa
gtgcccatgctgagcctgggcaacgccttcgaggaggaggacctgctggccttcgatcgt
agcgtccagagcggcctcggcctgtccggcggcgacctcttcggcggtggcgcagccgtg
gaatacagctgcgaaccgaagctcgacggcctggccgtcagcctgctgtaccgcaacggc
gtgctggagcgtggcgcgacgcgtggcgatggcgccaccggcgaggacatcagcgccaac
gtgcgcaccatccgcaacgtaccgctcaagctgaagggcgagggctggccgcaggtgctg
gaggtacgcggcgaggtgtacatgcccaaggccggcttcgaggagctcaacgcccgccag
gccgagagcggcggcaagacgttcgccaacccgcgcaacgccgccgccggcagcctgcgc
cagctggacccgaagatcaccgccagccgtccgctggagttctgctgctacggcatcggc
caggtcagcgccgaactggcccccacccaggtgggcatgctggagcgcctcaagggctgg
ggcattcccatcagccgagagctgcgcctggccaagggcgtcgaggcctgcctggactac
taccgcgacatcggccagcggcgcatggcgctgccctacgacatcgacggcgtggtgttc
aaggtcaacaccctggaggaccagcagcagctgggcttccgcgcccgcaccccgcactgg
gccatcgcccacaagttccccgcccaggaggagctgaccgagctactggacgtcgagttc
caggtcggccgtaccggcgcggtgacgcctgtggcgcgcctcaagccggtcaaggtggcg
ggtgtcaccgtcgccaacgccaccctgcacaacatggatgaagtcgcccgcctgggcctg
atgatcggcgacaccgtcatcatccgtcgcgccggtgacgtgatcccgcaggtcatgcaa
gtggtagcagagcgccgccctgcggatgcccgcccggtgcacgtgccggagcagtgcccg
gtgtgcggctccgccgtcgagcgcacccagctggtcaagcgcgccaagggcaaggccacc
accagcgaaggctcggtttaccgctgcgtcggccgcctggcctgcggcgcccagctcaag
caggcgatcatccacttcgcctcccgccgcgcgatggacatcgacggcctgggcgacaag
atcgtcgagcagctggtggataccggcctggtggcgtcgcccgccgacctctacaccctc
acctacgagcaggtggtggagctggagggcttcgccgatctgtcgacccgcaacttgctg
gcggcaatccaggacagcgccaagccgaccctggcgcgcttcatctttgccctcggcatt
cccgatgtcggcgaagagaccgccaagctgctggctcgcgccctcggctcgctgaagcgc
ctggaacaggccctgccggaagtgctgacctacctgcccgacgtggggctggaagtggcg
tcggagatccacaacttcttcggtgacgaccacaaccgccaggtgattgccgacctgctg
gcccgcggcgtcgtcctgcaggacgaaggcgaggtcagcgccgagttcaccgcctgcgcc
tccctgggtggcttcctcgacaagctgaacatccccggtatcgccaccaccggcgctgag
aagctggcggcccgcttcggcagcctgcagggcgtgatccaggccgattggctggacctg
cgccaggtggaacgcctcaacgaaaaggccgcccgctccctgcgcgacttcttcgacgag
ccggccaaccgcgagcacgccctgcgcatcgaggcgcaactgctggagttcggcatgcac
tggtcgtgcgagcgcaaggtggtggaagggctgcccctggccgggcagacctgggtgctg
accggcacgctggaggccatgagccgcgaccaggccaaggacaagctggaagccctgggg
gccaaggtcgcgggctcagtgtcggcgcgcacccactgcgtggtcgccgggccgggtgct
ggctccaagctggccaaggccaccgagctggggttgcgggtgctggacgaggagcagttc
ctcgctgaactgaagaccctcggcgccgcgtga
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