Polynucleobacter sp. KF022: PKF022_05570
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Entry
PKF022_05570 CDS
T10441
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
polk Polynucleobacter sp. KF022
Pathway
polk03030
DNA replication
polk03410
Base excision repair
polk03420
Nucleotide excision repair
polk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
polk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PKF022_05570 (ligA)
03410 Base excision repair
PKF022_05570 (ligA)
03420 Nucleotide excision repair
PKF022_05570 (ligA)
03430 Mismatch repair
PKF022_05570 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
polk03032
]
PKF022_05570 (ligA)
03400 DNA repair and recombination proteins [BR:
polk03400
]
PKF022_05570 (ligA)
Enzymes [BR:
polk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PKF022_05570 (ligA)
DNA replication proteins [BR:
polk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PKF022_05570 (ligA)
DNA repair and recombination proteins [BR:
polk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PKF022_05570 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PKF022_05570 (ligA)
MMR (mismatch excision repair)
DNA ligase
PKF022_05570 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PKF022_05570 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BDT74892
LinkDB
All DBs
Position
543494..545509
Genome browser
AA seq
671 aa
AA seq
DB search
MSSNSPTNLAERYAFLQAELARLEHAYYVLDNPLLPDIEYDRLYRELLDIEAAHPEWITP
ESLSQRVGGAALKEFDSVTHAVPMLSLNNAFEDAELIAFDRRCREALHTDHVTYAGELKF
DGLAISLRYENGSLVTAATRGDGASGEDVTANIKTIRAIPLKLTGKNIPQVLEVRGEVFM
YLKDFEKMNRQAAELGEKEFANPRNAAAGSLRQLDSKITAKRPLSFFAYGLGALEPQSWL
PKTHEELLNTYVDLGLPVCSERKVLHSVEEILAFYNEIGAKRDSLPYDIDGVVYKVNSFA
EQGKLGFVSRAPRFALAHKYPAQEALTTVLGIDVQVGRTGAITPVARLAPVEVGGVTVTN
ATLHNEDEVKRKDVRIGDTVSVRRAGDVIPEVVSVIKDRRPVDAKEFVMPINCPVCDSHI
ERLADEAVARCSGGLFCGAQRKQALIHFAHRRALDIEGLGEKIVDQLVDNNLVRTPADLY
RLGFTALANLERMGEKSADNLIQAINQSRNTTLARFIFALGIRHVGETTAKDLANHYQSM
HALMDANLEDLLTVKDVGPVVADSITSFMQEAHNREVIEQLLASGMQLAVEEKVISAAVA
GKTFVLTGTFPTMTRDEAKDLLEKAGAKVAGSVSKKTDYVVAGTDAGSKLTKAEELGVSV
IDEAAMLELLK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgtccaatagtccgacaaatttagcggagcgttacgcattcttgcaagccgagctc
gcccgccttgagcatgcttactacgttctagacaatccactcctgcctgatattgagtat
gaccgcctctatcgcgagttattggatattgaggctgctcatccagagtggatcaccccc
gagtccttatctcagcgtgtaggtggggcagcattaaaagagtttgattcggttacccat
gcggtacccatgctctccttaaacaatgcctttgaagatgccgagctgattgcttttgat
cgtcgttgccgtgaggcactccatacagatcatgtgacatatgctggtgagctgaagttt
gatggcttagctatctctcttcgttatgaaaacggctcattagtaaccgctgccactcgt
ggtgatggagctagtggtgaagatgtcacggccaatatcaaaacaattcgtgctattccg
ctcaaactcactggaaaaaacattccacaagtcctagaggttcgtggcgaggtctttatg
tatctaaaagattttgagaagatgaatcgacaggcagcagagttgggtgagaaggagttt
gccaatccccgtaatgcagcagcaggtagcctgcgtcaattagattcgaagatcaccgca
aaacgaccgctgtcattctttgcttatggattaggcgccctagagccgcagtcttggcta
cccaaaactcatgaagagttgctaaatacctacgtagatttgggtttaccagtgtgttct
gagcgcaaagtgttgcactcagtagaagagatcttggccttctataacgagataggcgct
aaaagggattcattaccatatgacattgatggcgttgtctataaagtgaactcattcgcc
gagcaaggtaagttgggatttgtctcgcgcgctcctagatttgcgttggctcataagtac
ccagcgcaagaggccctaaccaccgtcttgggtattgatgtacaagtgggccgtacaggt
gcaattaccccagtggcaagacttgccccggttgaagtgggtggcgttactgttaccaat
gccacgttacacaatgaagatgaagtcaaacgtaaagatgtacgcattggggatactgtt
tctgttcgtagagcaggtgatgtaattcctgaggtggtttcggtaattaaggatcgccgt
ccagtagatgcaaaagaatttgtcatgccaataaattgcccggtatgtgactctcatatc
gagcgtttagcagatgaggctgtagcacgctgtagtggcggactcttctgtggggctcag
cgcaaacaggctttaattcactttgctcatagaagagcgcttgatatcgaaggcctaggc
gagaagattgtggaccagttggtggataacaatttggttagaacaccagcagacctctac
agattaggcttcacagcgctagccaatcttgaacgtatgggcgagaagtcagcagataac
ctcattcaagcaattaaccaatctagaaatactaccttagcccgatttatctttgccttg
ggtattcgtcacgtgggtgagaccactgccaaggatttagccaatcactatcagtcgatg
catgcattaatggatgcaaatctcgaagacctactaacagtaaaagatgttggccctgta
gttgctgactccatcacgagtttcatgcaagaggcccacaatcgtgaagtaattgagcaa
ctcttagcctccggaatgcagcttgcagttgaggaaaaagtgattagtgctgccgttgca
ggtaaaacttttgtgctgaccggcacattcccaacaatgacaagagatgaagctaaagat
cttctagagaaggcaggtgccaaggttgcgggatcagtttcaaagaaaacagactatgtc
gttgccggaacagatgctggcagcaagctcacgaaagcagaagaattgggcgtttcggtg
attgatgaagcggcaatgttggaattacttaagtag
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