Pollutimonas sp. M17: OEG81_12315
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Entry
OEG81_12315 CDS
T09676
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
poll
Pollutimonas sp. M17
Pathway
poll03030
DNA replication
poll03410
Base excision repair
poll03420
Nucleotide excision repair
poll03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
poll00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OEG81_12315 (ligA)
03410 Base excision repair
OEG81_12315 (ligA)
03420 Nucleotide excision repair
OEG81_12315 (ligA)
03430 Mismatch repair
OEG81_12315 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
poll03032
]
OEG81_12315 (ligA)
03400 DNA repair and recombination proteins [BR:
poll03400
]
OEG81_12315 (ligA)
Enzymes [BR:
poll01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OEG81_12315 (ligA)
DNA replication proteins [BR:
poll03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OEG81_12315 (ligA)
DNA repair and recombination proteins [BR:
poll03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OEG81_12315 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OEG81_12315 (ligA)
MMR (mismatch excision repair)
DNA ligase
OEG81_12315 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OEG81_12315 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
UYO92686
LinkDB
All DBs
Position
complement(2611712..2613808)
Genome browser
AA seq
698 aa
AA seq
DB search
MTDRDEGRAEIAQRLAALRTQIAEHNRRYYVLDAPVVSDAEYDRLMSELLELEQAYPDLI
TPESPTQRVGAQPLSAFKSVRHAVPMRSLGNAFQAEDVLAFDKRVSDTLAGAGMAGADGQ
VEYVAELKFDGLAVSLRYEQGRLVQAATRGDGQTGEDITSNIRTLRSVPLMLAGDFPQVL
EVRGEVLMNRRDFERLNEAQQARGDKIFVNPRNAAAGSLRQLDPRITAQRPLRFFAYGWG
EIRIVHDGQTELFRQEAGDADMPRASHSAMLDWFQELGLPVNASRSVVAGAEGLLDFYTR
TGAGRGALPFDIDGVVYKVNSLAAQEVLGYVARAPRFAIAHKFPAQEETTVLLDIEVQVG
RTGAITPVARLKPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVVVRRAGDVIPEVVAPVP
ELRPEDARLFAMPASCPVCGSAIERPEDEAISRCTGGLFCAAQRKQSLTHAAGRKALDIE
GLGEKLVDQLVESGRVKSLADLFTLNADELAAYERMGRKSAENLVAALDAARKPTLGRLL
YALGIRHVGETTARDLARHFGSVDAVMDADEEALLQVNDVGPVVSGSILRFFAEPHNRQV
VAALAEAGVHPEPEATPAGGAQRLAGKTLVLTGTMPNWTRDEATRHILAAGGKVSGSVSK
KTAYVVAGEEAGSKLTKAQELGVAVLDEAGLKALLGVS
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacagggatgaagggcgcgcggaaatcgcgcaaaggctggcggccctgcgcacg
caaatcgccgagcacaatcgccgttattatgttctggacgcgcccgtcgtctccgatgcg
gagtacgacaggctgatgtccgagctgctagagttggagcaggcctatcccgatctgatc
acgccggaatcgcccacgcagcgcgtcggcgcccagcccctgtcggcattcaagagcgtc
aggcatgccgtgcccatgcgctccctgggcaacgccttccaggccgaggacgtgttggcg
ttcgacaagcgggtgtcggacaccctggcgggcgcaggcatggccggtgccgacggccag
gtcgaatacgtggcggaactgaagttcgatggcctggccgtcagcctgcgctacgaacag
ggacgtctggtccaggccgccacgcgcggcgacggacagacgggggaagacatcaccagc
aacatccgcacgctgcgttccgtccccttgatgctggcgggcgattttccgcaggtgctg
gaagtgcgcggcgaggtattgatgaaccgccgcgatttcgaacgcctgaacgaagcccag
caggcgcgcggcgacaagattttcgtcaatccgcgcaatgcggcggcgggcagcctgcgc
cagctcgatccccggatcaccgcccaaaggcctttgcgcttcttcgcctacggctggggc
gaaatacgcatcgttcacgacggacagaccgaattgttccggcaagaggcaggcgacgcc
gacatgccccgtgccagccattccgccatgctggactggttccaggaattggggctgccc
gtcaacgcgtcccgttcggtggtcgcgggtgcagagggcttgcttgacttttatacgcgc
acgggcgccggccgtggcgcgcttcccttcgacatcgacggcgtcgtctacaaagtgaat
tcgctggccgcgcaagaggtgctgggctacgtggcgcgcgctccgcgctttgccatcgcg
cacaaattccccgcccaggaggaaaccaccgtactgctggacatcgaagtgcaggtcgga
cgcacgggcgccatcacccccgtggcgcgcttgaagcccgtctttgtcggcggcgtcacc
gtcaccaacgccaccctgcacaacgaagatgagatccgccgcaaggacgtgcgcatcggc
gacaccgtcgtcgtgcgccgcgccggcgacgtcatacccgaagtggtcgcgccggtgccg
gaactgcggcccgaagacgcccgtttgttcgccatgccggcaagctgcccggtttgcgga
tcggccatagaacggcccgaggacgaggccatatcgcgctgcacgggcggcttgttctgc
gccgcgcaacgcaagcaaagcctgacccacgcggcggggcgcaaggccctggacatcgaa
ggcctgggcgaaaagctggtcgaccaactggtggagagcggacgcgtcaagtcgctggcc
gacctgttcacgctgaacgcggacgaattggcggcctacgaacgcatgggccgcaagtcc
gccgagaacctcgtggccgccctggacgccgcccgcaagccgaccctgggccgcctgctg
tatgcattgggcatccgccacgtcggcgaaaccaccgcgcgcgatctggcccggcacttc
ggctcggtcgatgccgtcatggacgccgacgaagaagccctgttgcaggtcaacgacgtc
ggccccgtcgtatccggctccatcctccgtttctttgccgaacctcataaccgccaggtc
gttgccgccctggccgaggccggcgtccacccggagcccgaagctaccccagcgggcggc
gcccagcgcctggccggcaagaccctggtcctgaccggcaccatgcccaactggacccgc
gacgaagccacccgccacatcttggccgccggcggcaaagtcagcggctccgtatccaag
aaaaccgcctacgtggtcgccggcgaagaggccggcagcaagctgaccaaggcccaggaa
ctgggcgtggctgtactggacgaggcgggattgaaggccttgctgggtgtgagctga
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