Polaribacter sp. Q13: JOP69_00065
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Entry
JOP69_00065 CDS
T10394
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
polq Polaribacter sp. Q13
Pathway
polq03030
DNA replication
polq03410
Base excision repair
polq03420
Nucleotide excision repair
polq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
polq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JOP69_00065 (ligA)
03410 Base excision repair
JOP69_00065 (ligA)
03420 Nucleotide excision repair
JOP69_00065 (ligA)
03430 Mismatch repair
JOP69_00065 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
polq03032
]
JOP69_00065 (ligA)
03400 DNA repair and recombination proteins [BR:
polq03400
]
JOP69_00065 (ligA)
Enzymes [BR:
polq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JOP69_00065 (ligA)
DNA replication proteins [BR:
polq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JOP69_00065 (ligA)
DNA repair and recombination proteins [BR:
polq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JOP69_00065 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JOP69_00065 (ligA)
MMR (mismatch excision repair)
DNA ligase
JOP69_00065 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JOP69_00065 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
Auto_anti-p27
AphA_like
HHH
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
QVY65728
LinkDB
All DBs
Position
10949..12946
Genome browser
AA seq
665 aa
AA seq
DB search
MTNQQKIEALRDELNIHNYNYYVLDNASISDYEFDIKLKELEKLETENPEFFDANSPTQR
VGGTVTKNFETVTHKNRMYSLSNSYSKEDLVDWEERVQKVLGTTEVEYTCELKFDGASIN
LTYINGKFIKAVTRGDGFQGDEVTNNIRTIRSIPLNIKSDFVRNFEMRGEIILPIDGFNK
MNEERVENGEDEYRNPRNTASGSLKLQDSAEVARRPLDCLLYQVVTEERKYKTHFESLEN
ARKVGFKVPETITLVKSIDEVFDFITNWDAKRHNLPYETDGIVVKVNNLHQQEELGYTAK
APRWAIAYKFKAEQVSTILNEITYQVGRTGAITPVANLEPVQLAGTTVKRASLHNADQIA
KLDIRVGDTVFVEKGGEIIPKIIAVDFTKRPADSKPTIYATHCPECNTELVRTEGDAKHY
CPNEFGCAPQITGRIQHFISRKAMDIDGLGGETVDLLRKEGLIQNYADLYDLTVEQVIPL
ERMAEKSAQNMIDGIIKSKEIPFEKVLFALGIRFVGETVAKKLAKHFKSIDNLMSADFET
LISVDEIGDRIAQSILDFSSDLGNIQLINRLKASGLQLEVSAESLENQTELLQGQIFVVS
GVFHQMSRNELKKAIEDNGGKVSSSISKKTNFIVAGDNMGPSKLTKAQDLGIKIISEEDF
INKIS
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgacaaatcaacaaaaaatagaagctcttcgagacgaattaaatatacataattataac
tattatgtattagataatgcctcaatttcagattacgagttcgatattaaattaaaagaa
ttagaaaaattagaaacagaaaatcctgagtttttcgatgcaaattctccaacacaaaga
gtaggaggtacggttacaaaaaactttgaaacggttactcataaaaatagaatgtattct
ttaagtaattcttattctaaagaagatttagtagattgggaagaaagagtgcaaaaagtt
ttaggaaccacagaggtagaatatacttgtgaattaaaattcgatggagcctctatcaac
ttaacctatataaacggaaaatttataaaagcagtaacccgtggcgatggttttcaagga
gatgaagtaactaataatattcgtactataagatcaattcctttgaatataaaatccgac
tttgtccgtaatttcgaaatgcgtggagaaatcattttaccaattgatggttttaataaa
atgaatgaagagcgtgtagaaaacggagaagatgaatatagaaacccaagaaataccgca
agcggaagtttaaaactacaagacagtgcagaggttgcaagaagacctttagattgttta
ttatatcaagtggttacggaagaacgtaaatataaaacgcatttcgaaagtttagaaaac
gcgagaaaagttggttttaaggttccagaaaccattactttggtaaaatctattgatgaa
gtttttgattttattactaattgggatgcaaaacgtcacaatttaccttatgaaacagac
ggaattgttgttaaagtaaacaatttacatcaacaagaagagttagggtatacagcaaaa
gcaccaagatgggcaattgcatataaatttaaagcagaacaagtttcaactattttaaat
gaaattacctatcaagtcggcagaacaggcgcaataactccagttgcaaatttagaacca
gttcaattagcaggtacaacggtaaaaagagcgtcattgcacaatgcagatcaaatagca
aaactagatattagagtaggagacactgtttttgtagaaaaaggaggcgagattattcct
aaaattattgcggtagattttacaaaacgtccagcagattcaaaaccaacaatatacgca
acacattgcccagaatgtaatacagagttagtaagaacagaaggagatgccaaacattat
tgtcctaatgaatttggatgtgcgccacaaattacaggaagaattcagcatttcatttct
agaaaagccatggatattgatggtttaggaggtgaaacggtagatttgttgcgtaaagaa
ggactcattcaaaattatgcagatttatacgatttaacggtagaacaagtcattccgtta
gaacgaatggcagaaaaatctgcgcaaaatatgattgacggaatcataaaatcaaaagaa
attccgttcgaaaaagtattatttgcactcggaatccgttttgtaggtgaaacggtcgct
aaaaaattagcaaaacattttaaatctatagacaatttaatgtccgcagatttcgaaaca
ttaatttctgtagatgaaattggagatagaatagcacaaagtattctcgatttttcatca
gatttaggaaacatacaattaataaatcggttaaaagcatctggactacaattagaagtt
tctgcagaaagcttagaaaatcaaacggaactattacaaggacaaatatttgtcgtttca
ggcgtttttcatcaaatgagtagaaacgaactcaaaaaagcaatagaagataatggaggt
aaagtaagttcatccatttctaaaaagacaaattttattgttgctggtgataatatggga
ccttcaaaactaacaaaagcacaagatttaggaattaaaattatttcagaagaagatttt
ataaataaaattagttaa
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