Polynucleobacter sp. TUM22923: TUM22923_11260
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Entry
TUM22923_11260 CDS
T10645
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
polt Polynucleobacter sp. TUM22923
Pathway
polt03030
DNA replication
polt03410
Base excision repair
polt03420
Nucleotide excision repair
polt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
polt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TUM22923_11260 (ligA)
03410 Base excision repair
TUM22923_11260 (ligA)
03420 Nucleotide excision repair
TUM22923_11260 (ligA)
03430 Mismatch repair
TUM22923_11260 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
polt03032
]
TUM22923_11260 (ligA)
03400 DNA repair and recombination proteins [BR:
polt03400
]
TUM22923_11260 (ligA)
Enzymes [BR:
polt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TUM22923_11260 (ligA)
DNA replication proteins [BR:
polt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TUM22923_11260 (ligA)
DNA repair and recombination proteins [BR:
polt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TUM22923_11260 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TUM22923_11260 (ligA)
MMR (mismatch excision repair)
DNA ligase
TUM22923_11260 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TUM22923_11260 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
STAR_dimer
Motif
Other DBs
NCBI-ProteinID:
BDX21805
LinkDB
All DBs
Position
complement(1146029..1148044)
Genome browser
AA seq
671 aa
AA seq
DB search
MASSSPTSLADRYTFLQSELARLEHAYYVLDAPIVPDSEYDRLFRELLDIELAHPQWITP
ASLSQRVGGSALKEFNSVTHVVPMLSLNNAFEETELIAFDRRCREGLHLDQVNYAGELKF
DGLAISLRYENGTLVRAATRGDGASGEDVTANIKTIHTIPLKLTGENIPAVLEVRGEVFI
YLQDFQKMNEQAAALGEKEFANPRNAAAGSLRQLDSKITAKRPLSFFAYGLGALEPAVWL
PKTHEALLNAYVTFGLPVCSERRVLKSVQEILNFYNEIGAKRGSLPYDIDGVVYKVNSFA
EQTQLGFVSRAPRFALAHKFPAQEALTIVLGIDVQVGRTGAITPVARLAPVEVGGVTVTN
ATLHNEDEVKRKDVRIGDTVSVRRAGDVIPEVVSVILERRPPDAQQFVMPTRCPVCESHI
ERLVDEAIARCSGGLFCQAQRKQALIHFAHRRALDIEGLGEKIVDQLVDHNLVRTPADLY
RLGFAALANLERMGEKSADNLISAIDQSRKTTLARFIFALGIRHVGETTAKDLANHYQSM
HALMDAKFDELLCVKDVGPVVANSITSFMEEPHNREVIEQLLASGMMLSVEEKMISAAVA
GKTFVLTGTFPTLTRDKAKDLLEKAGAKVAGSVSKKTDYVVAGTDAGSKLTKAEELGVVV
IDETAMLDLLA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
ttggcttcctccagtccgacatctttagcggatcgctatacttttttacagtctgaacta
gcgcgcttagagcatgcttactatgttttggatgcccccatcgttcccgatagcgaatat
gaccgcttatttcgagaattgttagatattgagctggcgcacccgcaatggattacgccc
gcatccctttctcagcgggtaggaggtagcgctttaaaagaatttaactccgttacccat
gttgtgccgatgttgtctttaaataatgcctttgaggagactgagctgattgcctttgat
cggcgctgccgtgagggtcttcacttagatcaagtaaattacgctggagagttgaaattt
gacgggttagcgatttctcttcgttatgagaatggcactctcgtaagagcggctactcga
ggtgatggggctagcggtgaagatgtaaccgccaatattaaaaccattcatacgatcccg
ttaaagctgactggcgaaaatattcctgcagtgttagaggtgcgtggagaagtttttatt
tatcttcaagactttcagaaaatgaacgaacaagctgctgcgcttggtgaaaaagaattc
gctaacccacgtaatgctgctgctggaagtctgcgacagcttgattctaaaattactgct
aagcgcccactgtctttctttgcttatggtcttggtgccctagagcccgcagtatggctg
ccaaaaacccatgaagcattgctcaatgcctacgtaacatttggtttgcccgtatgttcg
gaacgccgagtacttaaatcagttcaagagattctgaatttctataacgaaattggcgcc
aaaagagggtcgttaccttatgacattgatggcgtagtttacaaagtgaattcttttgcc
gagcagactcagttaggcttcgtttctagggcgcctcgatttgctttggcccataagttt
cctgcccaagaggctttgacaatagttctggggattgatgtgcaggtagggcgtactggc
gctattactccggttgcaaggttggctccagttgaggttggtggtgtgacggtaacgaat
gccaccttacacaatgaagatgaagtgaagcgtaaagatgtacgcatcggagatacggtc
tccgttcgccgtgccggtgatgtaattcctgaggtcgtgtctgtgatactagagcgtaga
cctcctgatgcgcagcaatttgtcatgcctacgcggtgccctgtttgcgaatcacatatt
gagcgattggtcgatgaggcaattgcacgctgtagtggtggcttattttgtcaggctcaa
cgtaaacaagctttaatccattttgctcatcgacgcgctttggatattgaaggtttgggt
gagaagattgttgatcagttggttgatcacaatttagtccgaactccagcggacctatat
cgcctaggctttgcggcgctggctaacttagagcggatgggagaaaagtcagctgataat
ctaattagcgccatagatcagtctcgcaaaactaccttagcccgctttatttttgcattg
ggtattcgtcatgtgggcgagactactgcaaaagacttggctaatcactatcaatcgatg
cacgctttgatggatgcgaagtttgatgagctgctatgcgtaaaagatgttggcccagta
gtggcgaactccatcactagcttcatggaagagccccataaccgtgaggtgattgagcaa
ttactcgcctctggcatgatgctttctgtggaagaaaaaatgattagcgcagcggttgct
ggtaagacttttgtattgactggtacatttccaacgttgacacgtgacaaggcaaaagac
ttactggaaaaagcaggggccaaggtagcaggttcggtctccaagaagactgattacgtt
gtagctggaacagatgctgggagcaaacttactaaggctgaggagctaggggtagtcgtc
attgatgagactgctatgttggacttgctagcttaa
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integrated database retrieval system
