Polaribacter sp. MED152: MED152_13454
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Entry
MED152_13454 CDS
T02533
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pom
Polaribacter sp. MED152
Pathway
pom03030
DNA replication
pom03410
Base excision repair
pom03420
Nucleotide excision repair
pom03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MED152_13454 (ligA)
03410 Base excision repair
MED152_13454 (ligA)
03420 Nucleotide excision repair
MED152_13454 (ligA)
03430 Mismatch repair
MED152_13454 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pom03032
]
MED152_13454 (ligA)
03400 DNA repair and recombination proteins [BR:
pom03400
]
MED152_13454 (ligA)
Enzymes [BR:
pom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MED152_13454 (ligA)
DNA replication proteins [BR:
pom03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MED152_13454 (ligA)
DNA repair and recombination proteins [BR:
pom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MED152_13454 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MED152_13454 (ligA)
MMR (mismatch excision repair)
DNA ligase
MED152_13454 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MED152_13454 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Nlig-Ia
DNA_ligase_A_M
5_3_exonuc
Auto_anti-p27
HHH
AphA_like
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
EAQ41047
LinkDB
All DBs
Position
2952697..2954694
Genome browser
AA seq
665 aa
AA seq
DB search
MNVQERIIELRNELNRHNYNYYVLDNATISDFEFDIKLKELDKLEQENPLFFDANSPTQR
VGGTITKNFNTVVHKNRMYSLDNSYSKDDLLDWEKRIQKILGTTEISYTCELKYDGASIN
LTYENGQFIKAVTRGDGFQGDEVTNNIKTILSIPLSIQDDFVSNFEMRGEIILPLDGFNK
MNQERVANGEEEYRNPRNTASGSLKLQDSAEVAKRPLDCLLYQVVTEERKYKTHFESLEQ
ARKVGFKVPKTIKLVNSIDEVFEFVNLWDTKRQDLPYETDGIVIKVNNLQQQEELGYTSK
APRWAIAYKFKAEQEATLLNEITYQVGRTGAITPVANLDPVQLAGTTVKRASLHNADQIE
KLDVRINDTVFVEKGGEIIPKIVGVDFSKRPENSEPTVYATNCPECGTELVRTAGDAKHY
CPNEFGCAPQITGRIQHFISRKAMDIDGLGGETVDLLRKEGLIQNYADLYELTVEKVLPL
ERIAEKSAKNLINGIEKSKEIPFEKVLFALGIRFVGETVAKKLAKHFKSIDNLMAADFET
LVAVDEIGDRIAQSIIDFSSNLTSIQLVNRLKEAGLQLSVSAESLENQTDKLKGQIFVVS
GVFHQMSRTELKKAIEDNGGKVSSSISKKTNFIVAGDNMGPSKLAKAETLGIQIISEQDF
INKIA
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaatgttcaagaaagaatcatagaattacgtaacgaactaaatagacacaattacaat
tactatgttttagataatgctacgatttctgattttgaatttgatattaaattaaaggag
ttagataagttagagcaggagaaccctctttttttcgatgccaattcaccaacgcaaaga
gtaggaggtactatcaccaaaaactttaatactgtagttcataaaaacagaatgtattct
ttagataattcttattctaaagatgatctgttagattgggaaaaacgaattcaaaaaata
ttagggactacagaaatttcatacacttgcgaactaaaatacgatggtgcatctattaac
ctaacttatgaaaatggtcagtttataaaagcagtaactagaggtgatggctttcaaggg
gatgaagtaactaataatataaaaaccattttatctattcctttaagtattcaagatgac
tttgtaagtaattttgaaatgagaggtgaaatcattttacctttagatggtttcaataaa
atgaaccaagaaagagttgcgaatggagaagaagaatacagaaacccaagaaatacagca
agtgggagtttaaaattacaagacagtgcagaagttgcaaaaagacctttagactgtttg
ttgtatcaagtagttacagaagagcgcaaatacaaaacccattttgaaagtttagaacaa
gcaagaaaagtcggttttaaagttcctaaaaccataaaacttgtaaattcaatagatgaa
gtttttgaatttgttaatctttgggatactaaaagacaagatttaccatatgaaacagat
ggtattgttattaaagtaaataatttgcagcagcaagaagagttgggctatacttctaaa
gctccaagatgggctattgcttataaatttaaagcagaacaagaagctaccttactaaac
gaaattacatatcaagttggtagaacaggtgcaattactccagttgccaatttagatcca
gtgcaattggcaggtacaactgttaaaagagcatctttgcacaatgcagatcaaattgaa
aagttagatgttagaataaatgatactgtttttgtagaaaaaggtggagaaataattcca
aaaattgttggggttgatttttctaaacgtccagaaaattctgagccaacagtatatgca
accaattgccctgaatgtggtacagaattggttagaactgcaggtgatgcaaaacactac
tgtccaaacgagtttggttgtgctccacaaattacaggaagaattcaacattttatttct
agaaaagcaatggatattgatggtttaggaggagaaactgtagatttactgagaaaagag
ggtttaattcagaattatgcagatctttatgagttaactgtagagaaagtgttaccatta
gaaagaattgcagaaaagtctgccaagaatctaattaacggtattgaaaaatcaaaagaa
attccgtttgaaaaagtattatttgctttaggaattcgttttgtaggagaaactgtggct
aaaaagttagccaagcattttaaatctatagacaatttaatggctgcagatttcgaaact
ttggtggctgtagacgagattggagatcgaattgcacagagtattatcgatttttcatca
aacttaactagtatacaacttgtaaatcgcttaaaagaggcaggattgcaattatcggtt
tcagctgagagtttagaaaatcaaacagataaacttaaaggacaaatatttgtggtttct
ggagtatttcatcaaatgagtagaacagaattgaaaaaggctatagaagataatggaggt
aaagtaagctcttctatttctaaaaagaccaattttattgtggctggtgataatatgggg
ccatcgaaactagcaaaagccgaaactctaggcatacaaataatatcagagcaagatttt
atcaataaaattgcttag
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