KEGG   Pongo abelii (Sumatran orangutan): 100174676
Entry
100174676         CDS       T01416                                 
Symbol
TARDBP
Name
(RefSeq) TAR DNA-binding protein 43
  KO
K23600  TAR DNA-binding protein 43
Organism
pon  Pongo abelii (Sumatran orangutan)
Pathway
pon03015  mRNA surveillance pathway
pon05014  Amyotrophic lateral sclerosis
pon05022  Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:pon00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    100174676 (TARDBP)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    100174676 (TARDBP)
   05022 Pathways of neurodegeneration - multiple diseases
    100174676 (TARDBP)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pon03019]
    100174676 (TARDBP)
Messenger RNA biogenesis [BR:pon03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Negative regulators of mRNA 3' end processing
     100174676 (TARDBP)
SSDB
Motif
Pfam: TDP-43_C TDP-43_N RRM_1 RRM_7 RRM_PARP14_3 RRM_3 RL
Other DBs
NCBI-GeneID: 100174676
NCBI-ProteinID: NP_001127597
Ensembl: ENSPPYG00000001894
UniProt: Q5R5W2
LinkDB
Position
1:complement(223198292..223211162)
AA seq 414 aa
MSEYIRVTEDESDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
NT seq 1245 nt   +upstreamnt  +downstreamnt
atgtctgaatatattcgggtaaccgaagatgagagcgatgagcccattgaaataccatcg
gaagacgatgggacggtgctgctgtccacggttacagcccagtttccaggggcgtgtggg
cttcgctacaggaatccagtgtctcagtgtatgagaggtgtccggctggtagaaggaatt
ctgcatgcccccgatgctggctggggaaatctggtgtatgttgtcaactatccgaaagat
aacaaaagaaaaatggatgagacagatgcttcatcagcagtgaaagtgaaaagagcagtc
cagaaaacatccgatttaatagtgttgggtctcccttggaaaacaactgaacaggacctg
aaagagtattttagtacctttggagaagttcttatggtgcaggtcaagaaagatcttaag
actggtcattcaaaggggtttggctttgttcgttttacggaatatgaaacacaagtgaaa
gtaatgtcacagcgacatatgatagatggacgatggtgtgactgtaaacttcctaattct
aagcaaagccaagatgagcctttgagaagcagaaaagtgtttgtggggcgctgtacagag
gacatgactgaggatgagctgcgggagttcttctctcagtacggggatgtgatggatgtc
ttcatccccaagccattcagggcctttgcctttgttacatttgcagatgatcagattgcg
cagtctctttgtggagaggacttgatcattaaaggaatcagcgttcatatatccaatgcc
gaacctaagcacaatagcaatagacagttagaaagaagtggaagatttggtggtaatcca
ggtggctttgggaatcagggtggatttggtaatagcagagggggtggagctggtttggga
aacaatcaaggtagtaatatgggtggtgggatgaacttcggtgcgttcagcattaatcca
gcgatgatggctgccgcccaggcagcactacagagtagttggggtatgatgggcatgtta
gccagccagcagaaccagtcgggcccatcgggtaataaccaaaaccaaggcaacatgcag
agggagccaaaccaggccttcggttctggaaataactcttatagtggttctaattctggt
gcagcaattggttggggatcagcatcaaatgcaggatcgggcagtggttttaatggaggc
tttggctcaagcatggattctaagtcttctggctggggaatgtag

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