Pongo abelii (Sumatran orangutan): 100174676
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Entry
100174676 CDS
T01416
Symbol
TARDBP
Name
(RefSeq) TAR DNA-binding protein 43
KO
K23600
TAR DNA-binding protein 43
Organism
pon
Pongo abelii (Sumatran orangutan)
Pathway
pon03015
mRNA surveillance pathway
pon05014
Amyotrophic lateral sclerosis
pon05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
pon00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100174676 (TARDBP)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
100174676 (TARDBP)
05022 Pathways of neurodegeneration - multiple diseases
100174676 (TARDBP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pon03019
]
100174676 (TARDBP)
Messenger RNA biogenesis [BR:
pon03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
100174676 (TARDBP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
RL
Motif
Other DBs
NCBI-GeneID:
100174676
NCBI-ProteinID:
NP_001127597
Ensembl:
ENSPPYG00000001894
UniProt:
Q5R5W2
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Position
1:complement(223198292..223211162)
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AA seq
414 aa
AA seq
DB search
MSEYIRVTEDESDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaatatattcgggtaaccgaagatgagagcgatgagcccattgaaataccatcg
gaagacgatgggacggtgctgctgtccacggttacagcccagtttccaggggcgtgtggg
cttcgctacaggaatccagtgtctcagtgtatgagaggtgtccggctggtagaaggaatt
ctgcatgcccccgatgctggctggggaaatctggtgtatgttgtcaactatccgaaagat
aacaaaagaaaaatggatgagacagatgcttcatcagcagtgaaagtgaaaagagcagtc
cagaaaacatccgatttaatagtgttgggtctcccttggaaaacaactgaacaggacctg
aaagagtattttagtacctttggagaagttcttatggtgcaggtcaagaaagatcttaag
actggtcattcaaaggggtttggctttgttcgttttacggaatatgaaacacaagtgaaa
gtaatgtcacagcgacatatgatagatggacgatggtgtgactgtaaacttcctaattct
aagcaaagccaagatgagcctttgagaagcagaaaagtgtttgtggggcgctgtacagag
gacatgactgaggatgagctgcgggagttcttctctcagtacggggatgtgatggatgtc
ttcatccccaagccattcagggcctttgcctttgttacatttgcagatgatcagattgcg
cagtctctttgtggagaggacttgatcattaaaggaatcagcgttcatatatccaatgcc
gaacctaagcacaatagcaatagacagttagaaagaagtggaagatttggtggtaatcca
ggtggctttgggaatcagggtggatttggtaatagcagagggggtggagctggtttggga
aacaatcaaggtagtaatatgggtggtgggatgaacttcggtgcgttcagcattaatcca
gcgatgatggctgccgcccaggcagcactacagagtagttggggtatgatgggcatgtta
gccagccagcagaaccagtcgggcccatcgggtaataaccaaaaccaaggcaacatgcag
agggagccaaaccaggccttcggttctggaaataactcttatagtggttctaattctggt
gcagcaattggttggggatcagcatcaaatgcaggatcgggcagtggttttaatggaggc
tttggctcaagcatggattctaagtcttctggctggggaatgtag
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