Pontibacillus sp. ALD_SL1: IMZ31_01950
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Entry
IMZ31_01950 CDS
T09942
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pona
Pontibacillus sp. ALD_SL1
Pathway
pona03030
DNA replication
pona03410
Base excision repair
pona03420
Nucleotide excision repair
pona03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pona00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IMZ31_01950 (ligA)
03410 Base excision repair
IMZ31_01950 (ligA)
03420 Nucleotide excision repair
IMZ31_01950 (ligA)
03430 Mismatch repair
IMZ31_01950 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pona03032
]
IMZ31_01950 (ligA)
03400 DNA repair and recombination proteins [BR:
pona03400
]
IMZ31_01950 (ligA)
Enzymes [BR:
pona01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IMZ31_01950 (ligA)
DNA replication proteins [BR:
pona03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IMZ31_01950 (ligA)
DNA repair and recombination proteins [BR:
pona03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IMZ31_01950 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IMZ31_01950 (ligA)
MMR (mismatch excision repair)
DNA ligase
IMZ31_01950 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IMZ31_01950 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
RNA_pol_A_CTD
BRCT_2
SpoOE-like
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QST00382
LinkDB
All DBs
Position
368565..370571
Genome browser
AA seq
668 aa
AA seq
DB search
MNKEEAKKRIEELRRELEQYNYEYHTLDQPSVSDYEYDKKTRELIDLEEEHPDLVTPDSP
SQRVGGAPLDAFQKVQHEIPMLSLGNAFDEQELRDFDRRVREGVDGEDVDYVCELKIDGL
AISLKYEDGLLVRGATRGDGQTGEDITQNLKTIKSIPLRIEQQEPIEVRGEAFMPHRSFL
TMNEKREANGEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFLYGVGQWEAGELESHSERL
EYMKSLGFKTNPEWKKCNDIEEVIDYVTKWTEERPNLNYEIDGIVIKVDSLEQQETLGFT
AKSPRWATAFKFPAEEAITKLTDIELSVGRTGAVTPTAILNPVQVAGTTVGRASLHNEDL
IREKDIRIGDTVVIKKAGDIIPEVVRVVTDERSGDEEPFYMPDVCPECGSDLERLEEEVA
LRCINPNCPAQLREGLIHFVSRNAMNIDGLGEKVIAQLFRENLVHTIADLYKLDKDELLQ
LERMGEKSADNLLSSINVSKENSLERLLFGLGIRFVGSKGARTLAEEFETMERLMNVTYD
ELVAIHDIGEKMADSIVRYFEKEPVVELIEELRGLGLNMEYKGQKRSEQPEDSPFAGKTI
VITGKMENYSRGDVKTHVEALGGKVTGSVSKNTDMLIAGEDAGSKYEKAEKLGIEIWDEA
RFQSALQE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgaataaggaagaagcaaagaaaagaattgaagaactccgtcgtgagttagagcagtac
aactatgagtaccatacgctcgatcagccatctgtatctgactatgaatatgataagaag
acgcgtgagctcattgatttagaagaagagcatcctgatcttgtcactccggattccccg
tcacagcgtgtaggcggggcacctcttgatgctttccaaaaggtgcagcatgagattccg
atgctgagcttaggtaatgcttttgacgagcaggagcttcgagatttcgatcgtcgtgtg
cgcgaaggcgttgacggtgaagatgtggactatgtgtgtgagttgaagattgacggacta
gcgatttctttgaaatatgaagatggactactcgttcgcggtgcaacgcgtggtgacggg
caaacaggtgaggacattacgcagaacctgaagaccattaagagtattcctcttcgtatt
gagcagcaggagccgattgaagtgcgcggagaagcctttatgccgcatcgttctttccta
actatgaacgaaaagcgtgaagcgaacggggaagagccttttgctaacccacgtaatgcg
gctgcaggttctcttcgccagcttgatccgaagatcgcagcgaagcgtaatttagatata
ttcttatacggcgttgggcaatgggaagctggagagcttgagtctcatagcgagcgactt
gaatatatgaagtcacttggatttaaaacaaacccggagtggaaaaagtgtaacgatatt
gaggaagtcatcgactatgttacaaagtggacagaagagcgtcctaatttgaactatgaa
attgatgggattgttattaaagtagacagtctagagcagcaagaaacgcttggtttcaca
gcaaaaagccctcgctgggcgacggcctttaagttcccggcagaggaagcaattacgaaa
ctaacggatatcgaattaagcgttggtcgtacaggtgccgtaaccccaacagcgattttg
aaccctgttcaagtagccggtacaacggtaggacgcgcttctctccataatgaggacctg
attcgtgagaaagatatccgcatcggggatactgttgtgattaagaaagcgggagatatt
atcccggaagtggttcgcgttgtgacggatgagcgctcaggagatgaagaacctttttat
atgcctgacgtatgtccggaatgtggaagtgatttggagcgtttagaggaagaagtggcg
cttcgctgtattaatccgaactgcccggctcagcttcgcgaaggccttatccactttgtt
tctagaaatgcgatgaacattgatggacttggtgagaaagtgattgctcaacttttccga
gagaatttggttcatacgattgctgacctgtataagttggataaagatgaactattgcaa
cttgagcgtatgggtgaaaagtcagcagataatcttctctcatctattaacgtctcgaaa
gaaaactcattagagcgcttgttatttggacttggcattcgttttgtcgggtcaaaagga
gccaggacgcttgctgaagagtttgaaacgatggagcgtttaatgaatgtgacctatgac
gagttggtggctatccatgacattggggaaaagatggcagattcaatcgttcgttacttc
gagaaagaaccggttgttgaattaattgaggaattaagaggcctcggtctgaatatggag
tataaagggcagaagagaagcgagcagcctgaagattctccgttcgcaggaaagaccatc
gtgattacaggaaaaatggaaaactatagccgaggcgacgtgaaaacacatgttgaagcg
ttaggtggtaaagtgacaggaagcgtgagtaagaacaccgatatgctaattgcaggggaa
gatgctggctcgaaatatgagaaagcagagaagctaggcattgagatctgggatgaggcg
cgcttccaatctgcgttacaagaatag
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integrated database retrieval system
