Populus trichocarpa (black cottonwood): 18098928
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Entry
18098928 CDS
T01077
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
18098928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18098928
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
18098928
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
18098928
NCBI-ProteinID:
XP_006382752
UniProt:
U5GE84
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All DBs
Position
5:3101953..3112777
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AA seq
948 aa
AA seq
DB search
MGVPAFYRWLADRYPLSIVDVIEEEPQEDSNGNSKPIDVSKPNPNGIEYDNLYLDMNGII
HPCFHPEGKPAPATYDDVFKSIFVYIDHLFALVRPRKLLFMAIDGVAPRAKMNQQRSRRF
RAAKDAAQAEAEEERLRKEFEAEGVLLSVKEKPETRDSNVITPGTQFMAVLSIALQYYIQ
SRLNHNPGWQNTKVILSDANVPGEGEHKIMSYIRLQRNIPGFNSNTRHCLYGLDADLIML
SLATHEVHFSILREMVIFPGQQDKCFLCGQAGHLAAECRGKQGDDALDWNVVDDTPIHKK
KYQFLNIWVLREYLQYDLDIPNPPFAIDFEKIVDDFVFMCFFVGNDFLPHMPTLEIREGA
INLLMHIYRREFSAMGGYLTLAGEVFLDKVEHFIQSVAVYEEQIFQKRARIQQAFENNEE
MKHKARRDLSEEIQAPPVDKVKLGEPGYKERYYAEKFDLSNEEEIDKVTKDVVLKYVEGL
CWVCRYYYQGVCSWQWFYPYHYAPFASDIKDLDEMEITFFLGEPFKPFDQLMGTLPAASS
NALPEEYRKLMTDPSSPIHQFFPSDFEIDMNGKRFAWQGIAKLPFIDERKLLAQTKKLER
TLMEEEQVRNSVMRDLLYVHPVHPLSQQVISYYHHNYRLPVSERIALKIDTRASGGMNGY
LWLSERNVWRSVVPSPINGLPTLEYNQVLNITYLTPSSHRHIPEPPEGVVMPEKILKPTD
IKLFPTLWHEDNGRRQQGRERPQVPRAVAGPVLGEAAHRLVKNTLNIKPNGSSSRGNYTF
NRPRPAGPAGYGRGYGDDPNYHYAHYNNQQGLMSNHMYPVSSNGVQGNRHNSRPQDRVQY
HQQYHDLSTGVSALTVEENFRSRAPAVISPRIPNPGYTTNLYNQFEHNTGPLPSPPTNWI
NKTAAGDAGMYFRQDTTSRGPNEKQLKQVYQVKTQVAQETSDILAQEI
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgccggcgttctacaggtggctcgcagaccggtacccgctatcaattgttgat
gtaattgaagaggaacctcaagaagattcgaatggaaactctaaaccaatcgatgtttca
aaacctaaccctaatggtatcgagtacgataatttgtatctggatatgaacgggattatc
catccctgcttccatcctgaaggaaagcctgcacctgctacttatgatgatgtgttcaag
tctatatttgtttacattgatcatttatttgctttggttcgtccaaggaagctacttttt
atggcaattgatggggttgctccaagagctaaaatgaatcagcaacggtcacgacggttt
agagctgcgaaagatgctgctcaagcagaagctgaagaagaaaggctgaggaaagagttt
gaggctgagggggtacttttatctgttaaagaaaagcccgaaacacgtgattctaatgtt
ataacacctggcactcaatttatggcagttctttcgattgcgcttcagtattatatacaa
agtagattgaatcacaatccaggctggcagaataccaaggttattctttctgatgcaaat
gttcctggtgagggagaacacaaaatcatgtcttatataagattgcaacgcaacattccc
ggtttcaattcaaacacacgccactgtctgtatggtctggatgcggatttgattatgctg
tctttagctacgcacgaggttcacttttcaatattaagagagatggtcatatttccaggg
caacaggataaatgttttctctgtggtcaagctggtcatcttgcagctgaatgtcgtggt
aagcaaggagatgatgctttagattggaatgtggtagatgataccccaattcacaagaag
aaatatcagtttctcaacatctgggttttgcgagaatatctgcaatatgatctggacatt
ccaaacccaccatttgcaattgacttcgaaaagatagtggatgactttgtgtttatgtgt
ttttttgttggcaatgattttcttccgcatatgccaacattggaaattcgggagggtgct
ataaacttactgatgcatatttatagaagggagttctctgcaatgggtggttatcttact
cttgcgggtgaggttttccttgataaagtagaacactttattcagtctgttgctgtttac
gaggagcaaatctttcagaagagggctcgtatacaacaggctttcgagaataatgaagaa
atgaaacacaaagcaagaagagatctctctgaagagatacaagcaccacctgtagataag
gttaaattaggggagcctggatacaaagagagatattatgctgagaaatttgatttatca
aatgaagaggagattgacaaagttacaaaagatgtggttttgaagtacgtggaaggtttg
tgttgggtctgtcgctattactaccagggtgtttgctcttggcaatggttttatccatac
cattatgctccatttgcttcagatattaaggatctggatgagatggaaataacctttttt
cttggagagccattcaaaccctttgatcaacttatggggaccctaccagctgcgagttct
aatgctttgccagaagaatacaggaaattgatgaccgacccatcttccccaattcatcaa
ttcttcccctcagattttgaaattgacatgaatggcaagcgctttgcttggcagggtatt
gccaaattgccattcatcgatgagaggaaattacttgcccaaacaaagaagcttgaaaga
actttaatggaggaagagcaggtcaggaatagtgtgatgcgtgatttgctatatgtccat
cctgttcatccattgtctcaacaagtcatttcttactatcatcataactatcgtttacct
gttagtgaaagaattgctttgaaaattgacacgagagctagtggtggaatgaatggttat
ctttggttatctgaaagaaatgtgtggagaagtgtggtcccttctcctatcaatggattg
ccaaccttagagtataaccaagttttaaatatcacatacctaactccttcaagtcataga
cacatcccagaacctccagagggtgtagtcatgcctgaaaagatcttaaaacctacagat
attaaactgtttcccacattatggcatgaagataatggccgcagacagcaaggcagggaa
aggccacaagtaccccgagcagtagctggccctgtattgggggaagcagctcatcgtctt
gtcaagaacacccttaatatcaaaccaaacggttcatcttctcgaggcaattacacattc
aacaggccaagacctgctgggccagctggttatggaaggggctatggggacgatccaaac
tatcattatgcacattacaataaccagcaaggcctaatgagtaatcatatgtatcctgtc
tcatcaaatggtgtgcaaggcaaccgacacaactctaggcctcaagacagagtgcagtac
catcaacagtaccatgatttgagtactggggtgtctgctctgactgtggaagaaaatttc
agaagcagggcacctgcagtgatctcaccacgaattccgaatccaggatacacaacgaat
ttatacaatcagtttgagcataacacaggtccacttccatcaccacccaccaattggatc
aacaaaacagcagcaggagacgctggaatgtacttcagacaagatacaacatcaaggggt
ccaaatgagaagcagttgaagcaggtttaccaggttaagacacaagtagctcaggagacg
tcagatattctagctcaagaaatataa
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