Populus trichocarpa (black cottonwood): 18099644
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Entry
18099644 CDS
T01077
Name
(RefSeq) transcription factor BHLH42
KO
K28363
basic helix-loop-helix transcription factor family protein
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
18099644
Transcription factors [BR:
pop03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
18099644
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH-MYC_N
bHLH-TF_ACT-like_plant
HLH
bHLH_IRO3
bHLH_SAC51
TSC22
ACT_ACR9_3rd
CCDC3_C
bHLH_NCOA
Motif
Other DBs
NCBI-GeneID:
18099644
NCBI-ProteinID:
XP_006383662
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All DBs
Position
5:21294455..21305946
Genome browser
AA seq
693 aa
AA seq
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MATPPSSRLQTMLQAAVQSVQWTYSLFWQMCPQQGILVWGDGYYNGPIKTRKTVQPMEVT
TEEASLQRSQQLRELYDSLSIGETNQPARRPCAALSPEDLTETEWFYLMCVSFSFPPGGG
LPGKAYARRRHVWLTGANEIDSKTFSRAILAKSARVQTVVCIPLLDGVVEFGTTDKVQED
LGLIQHVKTFFSDHHHRHLTPPKPALSEHSTSSPATSSHDHPRFHPPPIPPFYVAAEPSA
NAEQIDEDEEEDEEEEEHDSDSEAETSRDDHLEPRQAQNPHQVVAAEPSELMQLEMSEDI
RLGSPDDGSNNLDSDFPLTGPDNSMDHRSRADSYKAESARRWTMLQDNPFSGNLQPSASG
PPPLEDLAQEDTHYSQTISTILQSQPVWLAAEPSSIAYEARYHQSAFSRWTNRSDHLFHV
SVETTSQWLLKYILFSVPHLHSKSREDNSPKSRDGEAASRFRKGTPQDELSANHVLAERR
RREKLNERFIMLRSLVPFVTKMDKASILGDTIEYVKQLRQKIQDLETRNKQMESEQRPRS
VDRPQRTSTSDSLKKQKSGVTVVDRARSLGPLPDKRKMRVVEDSAGGGAKPKTVGALPQP
EPVVHKELETSVEVSIIESDALLELECGFREGLLLDIMQMLRELRIETIAVQSSLNNGIF
AGELRAKVKENVNGKKVSIVEVKRAIHKIIPHD
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggctaccccgcctagtagccgcttgcagactatgttacaggctgcagtgcaatcggtt
caatggacatacagtctcttttggcaaatgtgtccacaacaagggatcttagtgtgggga
gatgggtattacaatgggccaatcaagactagaaaaacagtgcaaccaatggaggttacg
actgaagaagcctccttgcaaaggagtcagcagcttagagagctctacgattcattatct
ataggagagaccaaccagccagcacgtcgaccttgcgccgccttgtcaccggaggacttg
acggagactgagtggttttatctgatgtgtgtttccttctctttccctcctggtggtggg
ttaccaggaaaggcctacgcaaggagacgacacgtatggcttactggtgcaaacgagatt
gatagcaaaactttctctagagcaatccttgccaagagtgctcgtgtacagactgtggtg
tgcatccctcttctcgatggtgttgttgaatttggcacaacagacaaggttcaagaggat
cttgggcttatccaacacgtaaaaaccttctttagtgaccaccaccaccgccaccttact
cccccaaaaccagctttatccgagcactccacttccagccctgccacctcctctcatgac
caccctcgtttccatcctccacccattcctcccttctatgtggctgcagagccatcagcc
aatgccgaacaaattgatgaggatgaagaagaagatgaggaggaggaggaacatgattca
gactcagaagccgaaaccagtcgcgatgatcacttagaaccgagacaagctcaaaaccct
catcaagttgtagcagctgagccgagcgagttgatgcaacttgagatgtctgaggatatc
aggcttggttctcctgatgatgggtctaataacttggactcggattttcctttgactggt
ccagacaactcgatggatcaccggagccgagctgactcgtataaagcggagtccgctcgg
aggtggacaatgttgcaagacaaccctttcagtggcaaccttcagccatcagcttcagga
ccacctccgctagaagacttggcgcaagaggacacgcactactcccaaaccatatcgacc
atcctccaaagccaaccggtatggctggcagcagagccatcgtccattgcatacgaggca
cggtaccaccaatcagccttttccaggtggacaaaccgctccgatcacctcttccacgtg
tcagttgagaccacctctcagtggctcctaaaatacattctctttagcgtaccacacctc
cacagcaaaagccgcgaagacaattccccaaagtcacgtgacggtgaagcagccagtcgg
ttccgcaaggggaccccacaggatgagctcagtgccaatcacgtgctagcagaacgacgc
cggagagagaagttaaacgagaggtttataatgctaaggtcgctggtgcccttcgtgacc
aaaatggacaaagcatcaatattaggggacacaattgaatacgtgaagcaactccgtcaa
aaaatccaggatttggagacgcgtaataaacagatggagagtgagcaacgcccgagatcg
gtggaccgtccacagaggacttctacttccgatagtttgaaaaagcaaaagagtggggtc
acagtggtggatcgggcgaggagtcttgggcctctgccagataagaggaagatgagggtc
gtagaggatagtgctggtggtggtgccaagcccaaaacggtgggtgccttgccacagcca
gagccggtggtccataaggagctggagaccagcgtagaggtgtcgataatagagagtgac
gcattgttagagttggaatgtggttttagagaggggcttttattagacataatgcaaatg
ctaagggagctcaggatagaaactattgcggttcagtcttctttgaacaatgggatcttt
gcaggggaattgagggccaaggtgaaggagaatgttaatggaaagaaggtgagcattgtg
gaggtgaagagagcaatacataaaataataccccatgattga
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