KEGG   Populus trichocarpa (black cottonwood): 18100330
Entry
18100330          CDS       T01077                                 
Name
(RefSeq) RING-box protein 1a
  KO
K03868  E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03420  Nucleotide excision repair
pop04120  Ubiquitin mediated proteolysis
pop04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    18100330
   04120 Ubiquitin mediated proteolysis
    18100330
  09124 Replication and repair
   03420 Nucleotide excision repair
    18100330
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pop04121]
    18100330
   03400 DNA repair and recombination proteins [BR:pop03400]
    18100330
Enzymes [BR:pop01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.32  cullin-RING-type E3 NEDD8 transferase
     18100330
Ubiquitin system [BR:pop04121]
 Ubiquitin ligases (E3)
  UBL E3 ligases
   18100330
  Multi subunit type E3
   SCF complex
    Ring finger protein
     18100330
   Cul2 complex
     18100330
   Cul3 complex
     18100330
   Cul4 complex
     18100330
   Cul7 complex
     18100330
   Cul8 complex
     18100330
   Cul9 complex
     18100330
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      18100330
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      18100330
SSDB
Motif
Pfam: zf-rbx1 zf-ANAPC11 zf-RING_2 zf-C3HC4 zf-C3HC4_2 zf-RING_11 DUF8003
Other DBs
NCBI-GeneID: 18100330
NCBI-ProteinID: XP_024458544
LinkDB
Position
6:complement(11854977..11861058)
AA seq 117 aa
MSTLDSEVTLVPVGETSGTAGPSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMD
LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
NT seq 354 nt   +upstreamnt  +downstreamnt
atgtcaactttggactcggaggtaaccctggttccagtaggcgagacgtcaggcactgct
ggtccttcttcctctaagaaaccaaagcgtttcgagatcaaaaagtggaacgccgtctct
ctctgggcttgggatattgttgttgataactgtgcgatttgcagaaaccatatcatggat
ctatgtattgaatgccaagcaaaccaggctagcgctactagtgaggaatgcactgttgct
tggggggtgtgtaaccatgcatttcactttcactgcatcagccgatggctcaagactcgt
caagtgtgcccattggataatagtgagtgggagtttcagaagtatggccactag

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