Populus trichocarpa (black cottonwood): 18106949
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Entry
18106949 CDS
T01077
Name
(RefSeq) isoleucine--tRNA ligase, cytoplasmic isoform X1
KO
K01870
isoleucyl-tRNA synthetase [EC:
6.1.1.5
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
18106949
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pop01007
]
18106949
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pop03016
]
18106949
Enzymes [BR:
pop01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.5 isoleucine---tRNA ligase
18106949
Amino acid related enzymes [BR:
pop01007
]
Aminoacyl-tRNA synthetase
Class I (U)
18106949
Transfer RNA biogenesis [BR:
pop03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
18106949
Prokaryotic type
Other AARSs
18106949
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1
Anticodon_1
DUF5915
tRNA-synt_1g
tRNA-synt_1e
Motif
Other DBs
NCBI-GeneID:
18106949
NCBI-ProteinID:
XP_024444614
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All DBs
Position
17:2288497..2302709
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AA seq
1183 aa
AA seq
DB search
MEEVCEGKEFSFPTQEEKILSFWSEIKAFETQLERTKDLPEYIFYDGPPFATGLPHYGHI
LAGTIKDIVTRYQTMTGHHVTRRFGWDCHGLPVEAEIDKKLGIKRRDEVLKLGIDKYNEE
CRGIVTRYVGEWEKVVVRVGRWIDFKNDYKTMDLKFMESVWWVFSKLFEKGLVYKGFKVM
PYSTGCKTVLSNFEVQQNYKDVPDPEIMVTFPIVDDPHNAAFVAWTTTPWTLPSNLALCV
NGNFDYIKVRNKYTGKVYVVAECRLSALPVEKPKSTANGPAGGSKTSNSKTKSGKAENLM
DSYDLLEKVKGNELVNKKYEPLFNYFMEFSDTAFRVVADDYVTDDSGTGIVHCAPAFGEE
DYRVCIGNQILSKENLIVAVDDDGCFIEKITDFGGRYVKDADKDIIEAVKAKGRLVKSGS
FMHSYPFCWRSDTPLIYRAVPSWFIRVEEIKEQLLESNKQTYWVPDYVKEKRFHNWLENA
RDWAVSRSRFWGTPLPVWMSDDGEEVIVMDSIAKLEKLSGVKVFDLHRHNIDHITIPSSR
GPEFGVLRRVEDVFDCWFESGSMPYAYIHYPFENVELFEKNFPGHFVAEGLDQTRGWFYT
LMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKSLKNYPSPMEVINDYGADALRLYLINS
PVVRAETLRFKKEGVFSVVKDVFLPWYNAYRFLVQNAKRLEVEGLAPFTPIDAGTLQNSS
NVLDQWINSATQSLVHFVHQEMNAYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRTGEE
DCRTALSTLYNVLLISCKVMAPFTPFFSEGLYQNMRRVCTGSEESIHYCSFPQVEGERNE
RIEQSVARMMTIIDLARNIRERHNKPLKSPLREMIVVHPDVDFLDDIAGKLKEYVLEELN
VRSLIPCNDTLKYASLRAEPEFSVLGKRLGKSMGVVAKEVKAMSQIDILEFEKAGEVTIA
SHCLKLSDIKVVREFKCPDGLTDREVDAAGDGDVLVILDLRLDESLYEAGVAREVVNRIQ
KLRKKTGLEPTDAVEVYFESLDEDKSISQQVLNSQELYIRDAIGSPLLSSTFMPPHAVIL
GEESFHDISKLSFTIYLARPALVFKSDAILSLYGVVSGNTKSVHGLETYLLSRDHSNLKS
EFQLGDGKITVDTVEGLPAVNVVLGEHVFLTVGDSVLSTKGGR
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagtctgtgaaggaaaagaattctcctttccaacgcaagaagaaaagatcctc
tccttctggtcagaaatcaaggcctttgaaacccaattagaacgcaccaaagacctccct
gaatacatcttctacgacggtccaccgttcgccactgggttacctcactatggacacatt
ttagccggtacaatcaaagatattgtgaccagataccagacgatgacagggcaccatgtg
acacgtcgttttggatgggattgccatggattgcccgttgaagctgagattgataagaaa
ttagggattaagagaagggatgaggtgttgaaattggggattgataagtacaatgaagag
tgtagagggattgttacaaggtacgtgggggaatgggagaaagttgttgttagagttggg
agatggattgattttaagaatgattataagaccatggatttgaagtttatggagagtgtt
tggtgggttttttccaagttgtttgagaaggggcttgtttacaagggttttaaggtcatg
ccttacagtacaggttgcaaaactgttctgtcaaattttgaagttcagcagaattataag
gacgtacctgatcctgagataatggtcacatttccaattgttgatgatccacacaatgca
gctttcgttgcttggacaactacgccatggactcttcccagtaatcttgccctttgcgtt
aatggaaattttgactatatcaaggttcgtaacaagtacactggaaaagtctatgtagtt
gctgaatgtaggctgtcagcacttcctgttgagaaaccaaaatcaactgcaaatggacct
gctggtggttcaaagacatcaaattctaaaactaagagtgggaaggctgaaaacttgatg
gattcttatgatttgttggagaaagtcaagggcaatgagttggtgaataagaagtatgag
ccgctattcaattacttcatggagttctctgacactgcatttagagttgttgccgatgat
tacgtgactgatgacagcggtactggcattgttcactgtgctcctgcatttggtgaagag
gattaccgtgtttgcattggaaatcaaatactcagtaaggagaatttgattgtagctgtt
gatgatgatggctgcttcattgaaaaaattactgatttcggtgggcgctatgtcaaggat
gcagacaaggatatcattgaagcagtgaaggcaaaaggcaggcttgttaagtctgggagc
tttatgcattcctatcccttctgttggagatctgatacacctctcatttatagagctgtt
ccaagctggtttattagagtggaagaaataaaagagcaactgttagaaagcaacaaacaa
acatactgggttcctgattatgtaaaggagaaacggtttcacaactggcttgaaaatgct
agagactgggcagttagtagaagtcgattttggggcactcctctacctgtatggatgagt
gatgatggtgaagaagtaatagtcatggattctattgctaaacttgagaagctttctggt
gttaaggtgtttgatctgcatcgtcataatattgatcacatcacaatcccatccagtcga
ggtcctgaatttggtgtgcttcgacgtgttgaggatgtatttgattgttggtttgagagt
gggtcgatgccttatgcttatatccattatccatttgagaatgttgaactttttgagaaa
aattttcctgggcattttgtggctgaagggctagatcaaactcgtggatggttctatact
ctcatggtattgtctactgcattatttgggaagcctgcgtttaggaatctcatttgcaat
ggacttgtcctggctgaggatggaaagaagatgagtaaaagtttgaaaaattatccatca
cctatggaagttattaatgattatggagctgatgcattacgattatacctgataaactct
ccagttgtgcgtgcagagaccttgcgtttcaaaaaggaaggtgtttttagtgttgtcaaa
gacgtgttcctcccgtggtacaatgcttatcggttccttgtacagaatgcaaagaggcta
gaggttgaagggcttgcaccatttactcctattgacgctggaactcttcaaaattcatcc
aatgtgcttgatcagtggataaactcagctacccagagtcttgttcattttgttcaccaa
gaaatgaatgcataccgcctttacacggtggtaccttatctcttgaagtttcttgacaac
cttacaaatatttatgtgcgattcaaccgcaaaagattaaaaggtcgtactggggaagaa
gactgccgaacagctctatcaactttatacaatgtgcttttaatatcatgtaaggtgatg
gcgccattcacacctttcttttcagaaggtctgtatcaaaatatgcggagagtttgtact
ggatcagaggaaagtattcactattgcagctttcctcaagtagagggggagaggaatgaa
cggattgaacagagtgttgcaagaatgatgaccattattgatcttgctcgcaatatccgt
gaacggcacaacaagcctcttaaatcgccattaagggagatgattgtagttcatcctgat
gtggactttcttgatgacatagctggaaaattgaaggagtatgtgctcgaggaactcaat
gtgagatctcttattccatgtaacgatactctgaaatatgcttctttgcgtgcggagcct
gagtttagcgtgttaggtaagcgacttggaaagtctatgggggttgttgccaaagaagtt
aaagcaatgtctcagatagatattttggaatttgagaaagctggagaagttaccattgct
tcacattgtctgaaactgtctgatattaaggttgttcgggaattcaaatgccctgatggt
ttgacagatagggaggttgatgctgctggagatggtgatgttttggtaatattagatttg
cgtctggatgagtcattatacgaggctggtgttgctcgtgaggttgtgaatagaattcag
aaattgaggaaaaaaactggacttgaacctacagatgcggttgaggtttactttgaatct
ctggatgaagataaatcaatctcccagcaggtcttgaattcacaggaactctatattagg
gatgcaattggttccccattgctttcttctacatttatgccaccacatgcagttatactt
ggtgaggagagtttccatgacatttccaagctgtccttcaccatatatttggcaaggccg
gcactagtgttcaaatctgatgccattctttcattgtatggagtggtttcaggaaataca
aaatctgtccatggtctagaaacttacttgctatcaagggatcattctaatttgaaatct
gaatttcaacttggagatggaaagataactgttgacaccgttgaaggcctccctgctgta
aatgtggtattgggagaacatgtgtttttgactgttggtgactccgttttaagcacaaaa
ggtggacgataa
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