Populus trichocarpa (black cottonwood): 18110978
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Entry
18110978 CDS
T01077
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
18110978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18110978
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
18110978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
CEMIP_beta-hel
Motif
Other DBs
NCBI-GeneID:
18110978
NCBI-ProteinID:
XP_006389319
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All DBs
Position
13:2317484..2328602
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AA seq
965 aa
AA seq
DB search
MGVPAFYRLLADRYPLSISDVIEEEPQEDSNGNSKPIDVSKPNPNGIEFDNLYLDMNGII
HPCFHPEGKPAPATYDDVFKSIFAYIDHLFALVRPRKLLFMAIDGVAPRAKMNQQRSRRF
RAAKDAAQAEAEEERLRKEFEAEGELLSVKEKPETFDSNVITPGTQFMAALSTALQYYIQ
SRLNHNLGWQNTKVILSDSNVPGEGEHKIMSYIRLQRNLSGFNPNTRHCLYSLDADLIML
SLATREVHFSILREIVTLPGQQDKCFLCGQAGHLAAECRGKQGDDALDWHVVDDTPIHKK
KYQFLNIWVLREYLQYDLDILNPPFAIDFERIVDDFVFLCFFVGNDFLPHMPTLEIREGA
ISLLMHIYRREFSAMGGYLTLAGEVFLDKVEHFIQCVGVYEEQIFQKRTRIQQAFDNNEE
MKLKARRESSEVIQAPVVDKVKLGEPGYKERYYAEKFELSNQEEIDKVRKEVVLKYVEGL
CWVCHYYFQGVCSWQWFYPFHYAPFASDLKDLGEVELNFFIGEPFKPFDQLMGTLPAASS
NALPKEYRKLMTNPSSPIHRFFPSDFEIDMNGKRFAWQGIAKLPFIDERKLLAQTKKLES
TLTEEEQIRNRVMLDLLYIHPVHPLAQLVISYYQQNDHLSEGERFAWEIDTRASGGMNGC
LWLYERNVRRSVVPSPILGLPALEGNQVLNITFLNPKNRAHIPEIPEGVVMPEKIVKPVD
LKPFPTLWHEDNGRRQQGRERPQVQRAIAAPFLGDAAHRLVKNTLNIKPNGSSSRVFDQQ
LYHSIPGNYTFYRPRPAGPAGYGRGYWDDPNYHYAQHSNQQGLMSNPRYRSLSNGVQSNR
HNFRTQDGVQYHQQYHNLSTGVSALTVEENIRSRAPAVISPRMPNPGNTPNLQNQAEQNT
GLLSSPPTNWINKTAAGNTGMYFKQKSTSIGPNEKQVKQVYQVKTQVAQETPDIQAQETP
DLKQQ
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtaccggcgttctacaggcttctcgcagaccgatacccgctatcaatttcggat
gtgatcgaagaggaacctcaagaggattcgaatggaaactccaaaccaatcgatgtttca
aagcctaaccctaacggtattgagtttgacaatctgtatttggatatgaacgggattatc
catccctgcttccatcctgaaggcaagcctgcacctgctacttatgatgatgtgttcaag
tccatatttgcttacattgatcatttgtttgctttggttcgtccaaggaaactacttttt
atggcaattgatggggttgctcctagagctaaaatgaaccagcaacggtcgcgacggttt
agagctgcaaaagatgctgctcaagcagaagctgaagaagaaagattgaggaaagaattt
gaggctgagggggagcttttatccgttaaagaaaagcctgaaacatttgattctaatgtt
atcactcctggcactcaatttatggctgctctttcgactgcgcttcagtattatatacaa
agtagattgaatcacaatctgggctggcagaataccaaggttattctttctgattcaaat
gttcctggtgagggagagcacaaaatcatgtcttatataagattgcaacgcaacctttcc
ggtttcaatccaaacacacgccattgtctgtatagtctggatgcagatttgattatgctg
tcattagccacgcgtgaggttcacttttccatattaagagagatagttacacttcccggg
cagcaggataaatgttttctctgcggtcaagctggtcatcttgcagctgaatgtcgtggc
aagcaaggagatgatgctttagattggcatgtggtagatgataccccaattcacaagaag
aaatatcagttcctcaacatctgggtgctgcgagaatatttgcaatatgatctggacatt
ctgaacccaccatttgctatcgactttgaacgaatagtggatgactttgtgttcctgtgt
ttttttgttggcaatgacttccttccgcatatgccaacattggaaattagggagggtgct
ataagcttactgatgcatatttatagaagggagttctctgcaatgggtggttatcttact
cttgcgggtgaggttttcctagataaagtagaacactttattcagtgtgttggtgtttac
gaggagcaaatctttcagaagaggactcgtatacaacaggctttcgataataatgaagag
atgaaactcaaagcaagaagagagtcctctgaagtgatacaagcaccagttgtagataag
gttaaattaggggaacctggatacaaagagagatactatgctgagaaatttgagttgtca
aatcaagaggagattgacaaagttagaaaggaagtggtattgaagtatgtggaaggattg
tgttgggtctgtcattattacttccaaggtgtttgctcttggcaatggttttatccgttc
cattatgctccatttgcttcagatcttaaggatctgggtgaggtggaattaaactttttt
attggagagccattcaaaccctttgatcaacttatgggaacgctaccagctgcaagttct
aatgctttgccaaaagaatacaggaaattgatgaccaatccatcttcaccaattcataga
ttctttccctcagattttgaaattgacatgaatggcaagcgctttgcttggcagggtatt
gccaaattgccattcattgatgagaggaaattgcttgcccagacaaagaagcttgaaagc
actttaacggaggaagagcagatcaggaatagagtgatgcttgatttgctatatattcat
cctgttcatccattagctcaactagttatttcatactatcaacagaacgatcatttatct
gaaggtgaaagatttgcttgggaaattgacacaagagccagtggggggatgaatggttgt
ctttggttatatgagagaaatgtgcggagaagtgtggtcccctctcctatacttggattg
ccagccttagagggtaaccaagttttaaatatcacatttctaaatcctaaaaaccgtgca
cacatcccagaaattcctgagggtgtagtcatgcctgaaaagatcgtaaaacctgtagat
cttaaaccattccccacattatggcatgaagataatggccggagacagcaaggcagggaa
aggccacaagtacaacgagcaatagctgcccccttcctgggggatgcagctcatcgtctt
gtcaagaacacccttaatatcaaaccaaatggttcatcctctagagtgtttgaccagcaa
ctatatcatagtatccccggcaattacacattctacagaccaagaccagctggaccagct
ggttatggaaggggctattgggatgatccaaactatcattatgcacagcacagtaaccag
caaggcctgatgagtaatcctaggtatcgatctttgtcaaatggtgtgcaaagcaaccga
cacaactttaggactcaagacggagtacagtaccatcaacagtatcataacttgagtact
ggggtgtctgctctgactgtagaagaaaatatcagaagcagggcacctgcagtgatctca
cctcgaatgccgaatccaggaaacactccaaacttacaaaatcaggccgagcagaacaca
ggtctactttcatcaccacccaccaattggatcaacaaaacagctgcaggaaacactgga
atgtacttcaaacaaaaatcaacatcgataggtccaaatgagaagcaggtgaagcaggtt
tatcaggttaagacacaagtagctcaggagacgccagatattcaagctcaggagacgcca
gatttaaaacagcagtaa
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