Populus trichocarpa (black cottonwood): 7454929
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Entry
7454929 CDS
T01077
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7454929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7454929
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
7454929
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_15
AAA_29
Arf
AAA_23
SMC_N
AAA
ORC-CDC6-like
AAA_30
nSTAND3
Zeta_toxin
TsaE
AAA_28
AAA_7
Motif
Other DBs
NCBI-GeneID:
7454929
NCBI-ProteinID:
XP_002308160
UniProt:
B9HBM3
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Position
6:6429713..6432315
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AA seq
328 aa
AA seq
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MGDMEHQEPTIVINGLRFTYPGIDGHPPPGSKPLIDEFSLNLNSGDRCLLVGSNGAGKTT
ILKILGGKHMVEPQMVRVLGRSAFHDTALTSSGHLSYLGGEWRREVAFAGFEVPIQMDIS
AEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLRPFKVLLLDEI
TVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLEEWPTHILYVAHGKLQFALPMAK
IKETSNLSLMRTVESWLRKERDEERKRRQERKAGGLPEYEKQVEGSRVTGDPARVGARVM
NNGWAAGRLHSTIAGEENFFLSSNRVLR
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgggcgatatggagcatcaagaaccaacaatagttatcaacggcctgagattcacgtac
ccaggaatcgacggtcacccacctcctgggtctaaaccgttgatcgatgagttctctctc
aacctcaattctggtgatcgatgccttcttgttggatccaacggcgctgggaaaactaca
attctgaagatattaggaggaaaacacatggtggaaccccaaatggttcgtgttctagga
aggtctgcttttcacgacactgctttaacttcttctggacatctttcttatcttggagga
gagtggaggcgagaagttgcttttgctggttttgaggttccgatacaaatggatatttct
gcggagaagatgatatttggggtggcaggtattgatcctcaaagaagagctgagctaatc
aaggtattggacattgatctgtcatggaggatgcacaaggtttctgatggccagagaagg
cgggtgcaaatttgcatgggtctcctgaggccattcaaggttcttcttcttgatgagata
acggttgacctcgatgtgctagcaagggctgaccttctgaagtttctaagaaaggaatgt
gaagagcgaggtgctacaattatctatgcaacgcatatatttgatggtttggaggagtgg
ccaacgcatattttgtatgttgctcatgggaagttgcaattcgcattgccaatggccaaa
ataaaagagactagtaatttgtcactaatgagaacagtggagagctggctgaggaaggaa
agagatgaggagaggaaaagaagacaagagagaaaggcaggaggtcttccagaatatgaa
aagcaggttgagggaagtcgagtgaccggtgatccagctcgtgttggtgctcgtgttatg
aacaatggttgggctgcaggaaggctgcactccaccattgcgggtgaagagaacttcttc
ttgagctcaaacagggttttgagatag
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