Populus trichocarpa (black cottonwood): 7464275
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Entry
7464275 CDS
T01077
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
7464275
03400 DNA repair and recombination proteins [BR:
pop03400
]
7464275
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
7464275
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
7464275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
SMCHD1_S5
HATPase_c
Motif
Other DBs
NCBI-GeneID:
7464275
NCBI-ProteinID:
XP_024438481
LinkDB
All DBs
Position
12:complement(1822660..1842042)
Genome browser
AA seq
1577 aa
AA seq
DB search
MEVKPSRKRQLELVPHDGGGGGGGGGGGGRGGGGGGSEGGVVYKFKILLPNGMTVIVRLT
DPKPEMWVQDFIGLVKREYTLAQRDSSPLLKKKRTLNWESESWFVEDGNGNLMKQRLKFK
SFMPHKCHILRLHDGSAEVTDTFENMWDLTPDTELLREFPEEYTFETALADLIDNSLQAV
WSVGENGRKRISVDIMKDKISIFDTGPGMDASDENSIVKWGKMGASLHRSFKAKAIGVKP
PYLIPYFGMFGYGGPIATMHLGRRALVSSKTKESRKVFTLHLEREALLRSSGSEPTWKTS
GGMRDPSEDEIGKSPQGSFTKVEILEPKVRDLDRFQLQCKLKDIYFPYIQCDEVSKTGKT
TRPVEFQVNGIDLAEIDGGEVSITNLHSCNGPEFVFQLCFSIKQDVASTRSSGSRASQEA
NARIKCVYFPISEGKESIEKILENLEDQGCGNGESFETFTRVSIRRLGRLLPDARWACLP
FMEFKQKKGDKAHILKRCCLRVKCFIETDAGFNPTPSKTDLAHCNPFTIALKNFSHKMPE
KEKEVNVDISRNGKLLSPSHLEKEYEDWILEMHSQYDTEVSAGEDDGVLVVGPTNKIPGI
SSDVVRVRDTLTRKGAIWKRGQKIKVLKGAGPGFHNKNVYLTLEHFLIEGVQGDAGGDAR
IICRPLDIAEENGCVLSVKDEIARFDIRSSISIPISMIDSGKCQTIESSEWNCQLQKQSQ
KAPSTIEVLGRKHCQELEIDGGFPAESTVEAGCTPPTEIVAVVRPGCYVSSSHSKILDQK
YIVKTNLEMSIEVKIRKSAEECQNVGHIYSARIGPSSHKGFDGLYIFSLGCKFPNLFKEA
GVYTFLFTLSDNNCKKYEKRLMVKASREVGKWKLLGDIQGKPCVRVGSRFPSLSIGCLDI
YGNQIPFKSVPEITVRLDSIMGVLAEIDKFKKGLSSDKLALKVQNMLIVSDKLDRIRPEY
EATLVICPVDGLVSVSIPCQVMPGSVQHITGQPPIQEKHLLPGFVVKELVLKMLDAHGNH
IKKGLEVQLNVDGFHILDKEGSKRKVDKDGCIDLSGVLKVTAGFGRIVSYSVSYQDKVVF
KQELQTEKRELRIASKLPEFLTAGSDLENIVFEVVDSQGDVDPRIHNEEKAGQCHSLTIK
SDSFNLQDAIQYTLRHGRCAILAIRIPPIEGSFCFIAAHSCYSELQLRVILPVMKAPIVE
CDENLSPYSSRKVPLLRDSLSLEHTESLMTPIENNEKGLVDDIEKYGERIGNSERQLKVL
NEKKTEIEEYVSGLQASMERTLNNSNYVLTKEEILVQIESRNHSAASILCHCYRDLSSQV
PQNHFMEGIFGLVALLGTVRTNKLSRILAEFLGEDQMLAVVCRSKEAASAFGKSICGRFL
VICLEDIRPYTGELECGDPQRKLKLQDPTLQCGNVPSGFIGYAANMINIDTRDMNISTAS
GYGLRETLFYRLFGELQVYDTKEHMNEAGACIKHGAVSLDGGINRVTENGIMSLGCWDSE
ICFPVGTLENEMSPAPERMKIQMQLEAGMEMLQDITGQIELVTRLRENALKKLKKKSKNY
SKLMDHVEAVESLRNRK
NT seq
4734 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgaagccgagtagaaagagacagttggaattggtgccgcatgatgggggtggt
ggtggtggtggtggtggtggtggtggacgtggaggaggaggaggaggaagtgaagggggg
gtggtttacaaattcaagattttgttaccgaatggaatgactgtgattgtgagactgact
gatccgaaacctgaaatgtgggtgcaagactttattggtctggttaaacgagaatatact
ttagctcaaagagattcatcacctttgctgaaaaagaaaagaactttgaactgggaaagt
gaaagttggtttgtggaggatggaaatggtaatttaatgaagcagaggcttaagtttaag
tctttcatgccgcataaatgccacatccttcggcttcacgatggatccgctgaggttact
gatacttttgagaacatgtgggatttgactcctgataccgaattacttagggagtttcca
gaagagtatacctttgagaccgcacttgctgatttaattgataattccttgcaagcagta
tggtctgttggtgaaaatgggaggaaacggatcagtgtggacattatgaaggataagatt
tcaattttcgatactggtcctggaatggatgctagtgatgaaaattctatagtgaagtgg
ggaaagatgggagcctcactgcatagatcattcaaggcaaaagcaataggggtcaaacct
ccttatttgataccttattttggcatgtttggatatggtggaccgattgctaccatgcat
ttagggagacgtgctttagtatcttccaagacaaaggagtcaaggaaagtctttactcta
catcttgagagagaggctctgctccgcagttctggttctgaaccaacttggaagactagt
ggaggcatgagggatccttcagaagatgaaattggaaaatcccctcagggaagtttcaca
aaggttgagatattggagcctaaagtaagagacttggacagatttcaactccaatgcaag
ctgaaggacatatattttccttatattcagtgtgatgaggtgtccaaaactgggaagact
accagacctgttgaatttcaggttaatggtattgatttagctgagattgatggtggggag
gtgtcaattaccaacttgcactcttgcaatggtccagagtttgtttttcagctttgcttt
tccatcaaacaggatgttgcctcaaccagaagctcaggttcaagggcgtctcaagaagcc
aatgcacgtataaagtgtgtttatttccccatttctgagggaaaagagagtattgaaaag
atattggagaatttggaagatcaagggtgtggaaatggagaaagctttgagaccttcaca
cgtgtctctattcggaggcttggccgtctacttccagatgctcgttgggcatgtcttcct
tttatggaattcaagcagaaaaaaggagataaagctcacatattgaagagatgctgctta
agagttaaatgttttattgagactgatgctggtttcaatcctacaccctcaaagactgat
ctagcacactgcaatccttttacaattgctttgaagaacttcagccataagatgcctgag
aaagaaaaagaagttaatgttgacatttcaaggaatggtaaattgttaagtccttcacat
ctggaaaaggagtatgaagattggattcttgagatgcattctcaatatgatacagaagtc
agtgctggtgaggatgatggagttcttgttgttggccccacaaacaaaatacctggcatt
tcatctgatgttgtgagagtgcgtgatactttgacgaggaagggagcaatttggaaacgt
ggtcagaaaataaaagttttaaagggagctggcccagggttccataataaaaatgtttac
ctaacattagaacattttttgattgaaggagttcaaggcgatgctggtggggatgctcgg
attatatgcaggccactggacattgcagaagagaatggctgtgtgctttcagttaaagat
gagattgccagatttgatattcgcagctctatatcaatacctattagtatgatcgactct
gggaagtgccaaactattgaaagttctgagtggaattgccaacttcagaagcaaagtcag
aaagctccctctacgattgaagtgcttggaagaaaacattgtcaagagttggagattgat
gggggattccctgctgaatctacagttgaagctggatgcactcctccaacggaaatagtg
gcagttgttcggcctggctgttatgtttcttccagtcattcaaagattttggaccaaaag
tatattgtcaaaactaatttagagatgtctatagaggttaaaatcagaaaatcagcagag
gaatgccaaaatgtagggcatatatattcagcgcgcataggtccttcttctcataaagga
tttgatggcttgtatattttttcactgggttgcaagtttcctaacttatttaaagaggct
ggtgtttacacttttttattcactcttagtgataataattgtaaaaaatatgaaaaaaga
ttgatggtcaaggcatctcgagaggttggaaagtggaagcttttgggtgatatacaggga
aaaccatgtgtgagggtgggttcacgatttccatcactctctattggatgtcttgacatc
tacggcaatcaaatcccatttaaatctgttccagaaataactgtgaggctagattcaatc
atgggtgtgcttgctgaaatagacaaatttaagaaaggcctttcttctgataaattggcc
cttaaagttcagaatatgctaattgtgagcgacaagttggatagaatacggccagagtat
gaagccactttggtgatatgccctgtagatgggttggtttcagtttctattccgtgtcaa
gttatgcctggatcagtacagcacatcacaggccaaccaccaatacaggaaaaacacttg
cttccaggttttgtggtgaaagaacttgtgttaaagatgcttgatgctcatggtaaccac
atcaaaaaaggtttggaagttcagttgaatgtggatgggtttcatatccttgataaagaa
ggttcaaagcgtaaggtggacaaggatggatgcattgatctcagtggtgtcttgaaggta
acagctggttttggaagaatagtatcatactctgtttcatatcaagacaaagttgttttt
aagcaagagcttcaaactgagaagagggagctgagaattgcatcaaagctaccagagttt
cttacagcaggatctgatctggaaaatatagtttttgaagttgtcgattctcagggtgat
gttgatcctcgtattcataatgaagagaaagctggccagtgccattcactaactataaag
tcagattcatttaatttacaggatgctattcagtatactttgaggcatggtcgctgcgct
attctggctattcgaatccctccaattgaaggaagcttttgctttattgctgctcactca
tgttactcagagctgcagctgagggtcatacttccagtcatgaaagccccaatagtggag
tgtgatgagaatttatcaccatattcaagcagaaaagtcccactgcttcgggactcatta
tccctcgagcatactgaaagcctaatgacgcccattgaaaataatgaaaagggactagtg
gatgacattgaaaaatatggtgagcgaattggaaattctgaaaggcaactaaaagtcctg
aatgaaaaaaagacagaaattgaggagtacgtgtctggactgcaagcttccatggaacga
accttgaacaattcaaactatgtgcttactaaggaggagatcctggtacaaattgaaagc
aggaaccattctgcagcatctattctttgccattgttatagagatttatcatcgcaagta
ccacaaaaccatttcatggagggtatattcgggttggttgccctccttggaactgttcgc
accaacaagctaagcaggatattggctgagttcttgggtgaagaccaaatgcttgctgtt
gtgtgcagatccaaggaagctgcaagtgcttttggaaaatctatttgtggtcgttttctt
gttatatgcctggaggatataaggccttacacaggggagcttgaatgtggtgacccacag
aggaaactaaagctgcaagatcctacattacaatgtgggaacgtgccatcaggtttcatt
gggtatgctgccaatatgattaatatagatacccgagatatgaacataagcacagcatct
ggatatggtcttcgagaaactttgttctatcgtctttttggagaacttcaagtttatgac
accaaagaacatatgaatgaagccggtgcttgtatcaaacatggtgctgtttctttagac
ggtgggatcaaccgagtcactgaaaatggaattatgtctcttggatgctgggattctgaa
atttgctttccagtcgggaccttggagaatgagatgagtcctgctccagagaggatgaaa
atccaaatgcaactcgaagcaggcatggaaatgttgcaagatataacaggacagatagag
cttgtgaccagactgcgtgaaaatgctttaaagaagttgaagaagaaatccaagaattat
agcaaacttatggatcatgtagaggcagtggagtctctgcgtaataggaaatag
DBGET
integrated database retrieval system
