Populus trichocarpa (black cottonwood): 7464824
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Entry
7464824 CDS
T01077
Name
(RefSeq) transcription factor PIF4-like isoform X3
KO
K16189
phytochrome-interacting factor
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
7464824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
7464824
Transcription factors [BR:
pop03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
7464824
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Motif
Pfam:
HLH
bHLH_SAC51
bHLH_IRO3
DUF2937
Motif
Other DBs
NCBI-GeneID:
7464824
NCBI-ProteinID:
XP_024456482
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Position
5:21185284..21190243
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AA seq
533 aa
AA seq
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MNHCIPDWNFEGDLPVSNQKKPIEPGNDLVELLWRNGQVVLHSQAHRKPSPHVQKHDSPT
VKGSGSILNSSHLIQDDDAVSWIQYPLEDSFEKEFCSNFFSELPPPLSDQILEGKSATFD
ASAPSQQQHQHQHQRQLNNNKPHVVSEFSGNPMPPPRIQVPEKNHAGVGGFGEAVNANFS
QFSAPFKGGDFRTSSGQFGGQGSGNSPQGEVRECSVVTVGSSNQIPHDRDMSRASSNAMG
TSTAFSTGPSMDDPRKIVSQSERGKTETLEATLTTSSGGSGSSFGRTCKQSAGPSSSQKR
KTIDTEDSEFQSEAAELDLDSMAGNNPTKRSGSTRRSRAAEVHNLSERRRRDRINEKMRA
LQELIPHCYKTDKASMLDEAIEYLKSLQLQLQVMWMGGGMAPMLFPGVQHFMSRMGMGPP
LPSMQNPMHLPRVQLIDQSISMAPTQNSGVMCQAPVLNPVNFHNQMQNPAFADQYARFMG
FHMQAASQPMNMFRFGSQTVQQNQMMAPTSSVGGPLSAGTAVSDAPPSDKVNW
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgaatcattgtattcctgattggaattttgagggtgatcttcctgtctccaatcagaag
aaacccatagagccaggcaatgacctagtagagctgctatggcgaaatgggcaggtagtt
ttgcatagccaggcacacagaaaaccaagccctcatgttcaaaaacatgattcaccaaca
gtaaagggcagtgggtcaattctgaattcaagccatttgattcaagatgatgacgctgtg
tcttggattcaataccctcttgaagattcttttgaaaaggagttctgttccaattttttc
tcggaattgcctccaccactttctgatcaaattttggaaggaaagtcggctacatttgat
gcctccgcaccttcacagcaacagcatcagcatcagcatcagcgacaactcaacaacaat
aaacctcatgtggtttctgaattttcaggaaatccaatgccccctccaagaattcaagtc
ccggagaaaaatcatgctggtgtaggaggatttggtgaagctgttaatgctaacttttct
cagttctccgccccctttaaaggaggtgattttagaacttcaagtggacaatttggaggc
caggggtctggaaactctccacaaggggaggtcagggagtgttcggtggtaacagtaggg
tcaagcaatcaaattccacatgatcgtgatatgagccgtgcttctagtaatgctatgggg
actagtactgccttttctactggaccatccatggatgatccacgaaaaatagtctcccag
agtgagagaggcaaaactgagacacttgaggctactcttaccacatcctcaggtggatca
ggtagtagttttggtagaacatgtaagcaatctgcaggacctagtagtagccagaaaaga
aaaactatagacacagaggattctgagttccaaagcgaggctgccgaactcgatctcgat
tcaatggcaggaaacaatccaaccaaacgatcaggatctacccgcaggagtcgtgcagct
gaagtgcataacctctcagaaaggagacggagggataggattaatgagaagatgagagca
ttgcaagagctcatacctcactgctacaagacagataaagcatcaatgctggatgaggca
attgagtacttgaagtcacttcagttacaacttcaggtaatgtggatgggtggtgggatg
gcccctatgctgtttccaggagtgcagcatttcatgtctcgcatgggaatgggtccccct
ctgccttctatgcaaaatccaatgcatttgcctagggtccaactcattgatcaatccatt
tctatggctccgacacagaactcgggagtaatgtgccaagctccagtgttgaatccagtt
aattttcacaaccagatgcaaaatccggctttcgctgaccagtatgcgcgtttcatgggc
tttcatatgcaagccgcttctcagcccatgaatatgttccggtttggctcgcaaacagta
cagcagaatcaaatgatggcaccaacaagcagtgttggcggacccttgagtgctggaacc
gcagtcagtgacgctcctccaagtgacaaggttaattggtga
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