Populus trichocarpa (black cottonwood): 7469218
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Entry
7469218 CDS
T01077
Name
(RefSeq) sm-like protein LSM3B
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7469218
09123 Folding, sorting and degradation
03018 RNA degradation
7469218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7469218
03041 Spliceosome [BR:
pop03041
]
7469218
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
7469218
mRNA degradation factors
5'-3' decay
Lsm complex
7469218
Spliceosome [BR:
pop03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
7469218
Complex C
U2 snRNP components
7469218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
TIG_SUH
Glutaredoxin
Motif
Other DBs
NCBI-GeneID:
7469218
NCBI-ProteinID:
XP_002307496
UniProt:
B9H7R8
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Position
5:complement(19892919..19895123)
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AA seq
97 aa
AA seq
DB search
MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA
NT seq
294 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcgaagaagagagtgcggtaaaagaaccattggatctcatcagacttagcctg
gacgagcgtatctacgtcaagctccgctctgatcgtgagcttcgcggcaaacttcacgct
tatgatcagcatttgaatatgattcttggggatgttgaagaaattgttactacagtagaa
atcgatgatgaaacctatgaagagattgttcggactacaaggcgcacagtacccttcctg
tttgttagaggagatggtgtcatattggtctctcctccattgaggacagcttaa
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