KEGG   Populus trichocarpa (black cottonwood): 7469218
Entry
7469218           CDS       T01077                                 
Name
(RefSeq) sm-like protein LSM3B
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03018  RNA degradation
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    7469218
  09123 Folding, sorting and degradation
   03018 RNA degradation
    7469218
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7469218
   03041 Spliceosome [BR:pop03041]
    7469218
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     7469218
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     7469218
Spliceosome [BR:pop03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    7469218
 Complex C
  U2 snRNP components
    7469218
SSDB
Motif
Pfam: LSM TIG_SUH Glutaredoxin
Other DBs
NCBI-GeneID: 7469218
NCBI-ProteinID: XP_002307496
UniProt: B9H7R8
LinkDB
Position
5:complement(19892919..19895123)
AA seq 97 aa
MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA
NT seq 294 nt   +upstreamnt  +downstreamnt
atggcaagcgaagaagagagtgcggtaaaagaaccattggatctcatcagacttagcctg
gacgagcgtatctacgtcaagctccgctctgatcgtgagcttcgcggcaaacttcacgct
tatgatcagcatttgaatatgattcttggggatgttgaagaaattgttactacagtagaa
atcgatgatgaaacctatgaagagattgttcggactacaaggcgcacagtacccttcctg
tttgttagaggagatggtgtcatattggtctctcctccattgaggacagcttaa

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