KEGG   Populus trichocarpa (black cottonwood): 7469865
Entry
7469865           CDS       T01077                                 
Name
(RefSeq) LOW QUALITY PROTEIN: U11/U12 small nuclear ribonucleoprotein 65 kDa protein
  KO
K13157  U11/U12 small nuclear ribonucleoprotein 65 kDa protein
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pop03041]
    7469865
Spliceosome [BR:pop03041]
 Other splicing related proteins
  Minor spliceosome components
   Minor spliceosome specific factors
    7469865
SSDB
Motif
Pfam: RRM_1 RRM_occluded Mito_fiss_reg DUF4605
Other DBs
NCBI-GeneID: 7469865
NCBI-ProteinID: XP_052305262
LinkDB
Position
19:4446619..4457339
AA seq 464 aa
MSAFPSPQNLMNAQLQDFGFQGNDLKAESVEPQVTVTLLIKHLPEAIPFKTLSRLFSHYG
AVSVRPCNSGRLKNCAFVDFKSESLAYQAHTQLNGLSFLGKVLSVERASKLSEAQQGKES
VPPTSLIEDASVTRDVGDGSKFRSFPASEPIAPRLGVDYPFPPHLEYAYPPPDGNILTNI
VNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPAALVPPPPPPPPRISEKSPLAE
QSSSESEMESSDEEFDDKALYEASGAVKPRRKRVKREAIVGPAADKDIVHEAVGLKPAFL
VPKEIPVIKKKNPVLQIKIAPRVTQNEHKDDNIATESEDPDKEXVAEEIESKRLAPEEIL
SLPKFKNYTVGKPAPVLYIKNLDKEVVFDDFFYIFGSLFGSIDAAKSGLSVKLMQEGRMR
GQAFVTFPSVELAHQALNLVNGYVFRDKPMIIQFGRNPTAAKPN
NT seq 1395 nt   +upstreamnt  +downstreamnt
atgtctgcttttccttctccacagaatttaatgaatgcccagctgcaggattttgggttt
caaggcaacgatttgaaagcagaatcagtagaaccacaagtgactgttacccttttgatc
aaacacctccctgaagctattccttttaaaactctttcaaggcttttctctcattatggt
gctgtctctgttcgtccttgcaattctggaagattgaaaaattgtgcatttgttgatttc
aaaagtgaaagcttggcttatcaagcgcatactcagttaaatgggctgagttttcttggc
aaggtcttatcggtggagagagctagtaagctaagtgaggctcaacaaggaaaagaatct
gtaccaccaacatctttgattgaggatgcttctgtgactagagatgttggcgatggctca
aaattcaggtcctttcctgctagtgaaccaattgctccaaggcttggtgttgactatcca
ttcccccctcatttggagtatgcttaccctccaccagatggaaacattctaaccaacatt
gtaaatgctcttattgctgttcctcgcttctatacacaggtgttgcatttgatgaacaaa
atgaatattccagctccatttagaatggccctgcccactccacctctcccccctgcagca
cttgtgcctccaccaccaccaccacctcctcgtatatctgaaaagtctccattggcagag
caatccagtagcgagtcagaaatggagtcttcagatgaggagtttgatgataaagccttg
tatgaagcctcaggagctgttaaacccagaagaaagcgtgtcaagcgggaagcaattgta
ggacctgcagctgataaagacatagttcatgaggctgttggcctgaaacctgccttcttg
gtcccaaaagaaattccagttataaagaaaaagaatcctgtgctgcagattaagattgca
ccaagagtaactcaaaatgaacataaagatgataacatcgcgacagaatctgaggaccca
gacaaagagnnggttgcagaagaaatagagagtaaaagactagctccagaggaaatttta
tcacttccaaagtttaagaactacacagttgggaaacctgcacctgtgctgtacataaag
aacctggacaaagaagtggtttttgatgatttcttctacatatttggatcattgtttgga
agcattgatgcagcaaaaagtggcctcagtgtcaagttgatgcaggagggaagaatgagg
ggccaagcttttgtaacatttccatcagttgaacttgcccatcaagctctgaatctagtg
aatggatatgtattcagagacaaaccaatgatcatacaatttggtcggaatcccacagct
gccaagccaaattag

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