Populus trichocarpa (black cottonwood): 7471958
Help
Entry
7471958 CDS
T01077
Name
(RefSeq) ABC transporter I family member 19 isoform X1
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7471958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7471958
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
7471958
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
ORC-CDC6-like
AAA_15
SMC_N
AAA_24
nSTAND3
AAA_23
AAA
AAA_28
NACHT
AAA_22
Zeta_toxin
AAA_25
SRP54
AAA_30
nSTAND_NTPase5
AAA_5
G-alpha
PduV-EutP
AAA_14
AAA_33
AAA_7
FtsK_SpoIIIE
ATP-synt_ab
Motif
Other DBs
NCBI-GeneID:
7471958
NCBI-ProteinID:
XP_002302037
LinkDB
All DBs
Position
2:complement(2395844..2398915)
Genome browser
AA seq
300 aa
AA seq
DB search
MAEKASQSIEKEGGENEKANSISICGMQFAYAGQHPLFYDFNLNISPGSRCLLVGANGSG
KTTLLKIMAGKHMVGGKDVVRVINGSAFHDTQLVCSGDLAYLGGSWSKTVGSAGEIPLQG
DFSAEHMIFGVEGTDPVRREKLIDLLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLL
DEVTVDLDVVARMDLLEFFKEECDQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK
LTEVHELKSSANLLSVVESWLRHETKSEKKKPTNPPAQNQKTSPLGSSPFMSSRHMAYYR
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaaagcttctcaatcaatagaaaaggaaggaggagaaaatgagaaggcaaac
agtatcagtatatgcggaatgcaattcgcatacgcaggacagcatccactcttctacgat
ttcaatctcaacatctctcccggatctcgttgccttctcgtcggcgctaacggatctggg
aagactactttgctgaaaataatggcagggaagcatatggtaggagggaaagatgtggtg
cgggtgataaatggttcggcttttcatgatacgcaattggtttgtagtggtgacttggct
tatttaggaggttcttggagtaaaactgttggatctgctggagagattccactacaggga
gacttctctgcggaacatatgatatttggagttgaagggactgatcctgttagaagagaa
aagttgattgacctgcttgacattgatctgcaatggcgaatgcacaaggtatctgatggg
cagcggcgaagagtccagatttgcatgggtcttctccatccatttaaggttcttttactt
gatgaagttacagtcgatctagatgttgttgccaggatggatttgcttgagttcttcaag
gaagagtgtgatcagagaggagctacaattgtatatgctactcatatttttgatgggtta
gagacttgggcaactcatctagcttacatacaagacggtgagctgaggagggctgagaag
ctaacggaggttcatgagttgaaaagctcagccaatctgctttctgttgttgagtcttgg
ctccgtcatgaaaccaagagtgagaaaaagaaacccaccaaccctcctgcccaaaatcaa
aagacctctccacttggtagttctcctttcatgtcatctagacacatggcatactaccgt
tga
DBGET
integrated database retrieval system
