Populus trichocarpa (black cottonwood): 7478869
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Entry
7478869 CDS
T01077
Name
(RefSeq) transcription factor PIF3 isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04075
Plant hormone signal transduction
pop04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
7478869
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
7478869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
7478869
Transcription factors [BR:
pop03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
7478869
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GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
7478869
NCBI-ProteinID:
XP_024438995
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All DBs
Position
13:complement(93426..99514)
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AA seq
720 aa
AA seq
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MPLSELLYRMAKGKTDSSQEKNPACSTDLSFVRPENDFGELIWENGQIQYSRARKIQTCN
SLPPKIRDKDIGNGTNTKTGKFGTMESTLNELLAVPAVEVRANQDDDMVPWLNYPLDEPL
QHDYCSDFLPELSGVTVNEHSSQSNFPSFDKRSCNQSITDSHTVSVHNGLNLEQGDVVMN
SSAGDIDAKRPRTSASQLYPSSSEQCKTSFPFFRSRDSTKKDDSTSNAVHHVIAPDSIRA
PTSGGGFPSIKMQKQVPAPSPINSSLINFSHFARPAALVKANLQNVGMRASSGTSSMERM
QNKDKGSIGLPKETDSHCRPNMMSSKVEVKPTEVKPAEGSVPAELPEEMSQEGDSKSDRN
CHQNFGESAIKGLEDVEKTTEPLVASSSVGSGNSAERPSDDPTENLKRKHRDTEESEGPS
EEIIYVQDAEEESVGAKKPASARAGNGSKRGRAAEVHNLSERRRRDRINEKMRALQELIP
NCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGMYMPSMMLPPGMPHMHAAHMGQFLPMG
VGMGMGFRMGMPDMNGGYSGCPMYQVPPMHGAHFPGSQMSGPSALHGMGGPSLQMFGLSG
QGLPMSFPRAPLMPMSGGPPPKTNREPNACGVVGPMDNLDSATASSSKDAIQNINSQVMQ
NNVANRSMNQTSSQCQATNECFEQPAFAQNNGEGSEVAESGVLKSAGGTDITPSRATGCD
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgcctttgtctgagctcctataccgaatggctaagggaaaaactgattcttctcaagag
aagaatcctgcttgttcaactgatctgtcttttgtcagacctgagaatgattttggtgag
ctaatatgggaaaatggtcagattcaatacagtagagctagaaagatacaaacttgtaac
agcttacctcccaagattagagataaagacataggaaatggcaccaatactaaaacaggt
aagtttggaacgatggagtctacactgaatgaactccttgcggttcctgctgttgaagtg
agggcgaatcaagatgatgacatggtaccttggctgaattatccattggatgaacctctg
caacatgattattgttctgattttttgcccgaattatcgggggttactgtaaatgaacac
tcctcccagagtaattttccatcgtttgataaaagaagttgtaaccagtcaattacggac
tcccatactgtttcggtacacaatggtttgaacttagagcaaggagatgtggtgatgaat
tcttcagcaggagatattgatgctaagaggcctagaaccagtgctagtcagttatatccg
tcatcttctgagcaatgcaaaacatcatttccgttttttagatccagggattcaactaaa
aaagatgatagtacaagcaatgctgtccaccatgtcattgcaccagattctattcgagct
ccaacatcaggaggtggttttcccagcataaagatgcagaagcaagttccagcaccatcc
cctatcaactccagtttaattaatttctctcactttgcaagaccagctgctcttgtaaaa
gctaatcttcagaacgttggcatgagagctagttctggaacttcaagcatggaaagaatg
caaaataaagataagggctcaattggtttaccaaaggaaacggactcccattgccgtcct
aatatgatgtcatccaaggttgaggttaaaccaacagaggttaagcctgctgaaggatct
gttcctgctgagctacctgaggaaatgagccaagaaggtgactctaaaagcgatagaaac
tgtcatcaaaattttggtgaaagtgcaattaaaggattagaagatgttgaaaagactaca
gaacctctggttgcttcttcttctgttggttcgggcaatagcgcagagagaccttctgac
gatccaactgagaatctgaagagaaaacatcgtgatactgaggagtctgaaggtcctagt
gaagaaataatctatgtgcaggatgctgaagaagaatcagtaggtgcaaaaaaaccagct
tctgctcgagcaggtaatgggtccaagagaggtcgggcagcagaagttcataacttatct
gaaaggaggcgaagggataggatcaatgagaagatgcgagccctacaagaactcatacca
aactgcaataaggtggataaagcttcaatgcttgatgaggccattgaatatttaaagact
cttcagcttcaagtacaaattatgtcaatgggagctggaatgtacatgccatcaatgatg
ttacctcctggaatgcctcacatgcatgcagctcatatggggcagttcttacccatgggt
gttggaatgggaatgggtttccggatgggtatgcctgacatgaatggtggatattctggt
tgccctatgtatcaagtacctcctatgcatggagcacatttccctggctcgcaaatgtca
gggcctagtgctttgcacgggatgggaggacctagtcttcagatgtttgggctttctggt
caaggacttccaatgtcatttcctcgtgcacccttaatgccaatgtctggagggcctcct
ccgaaaacaaacagggaaccaaatgcttgtggggtggtaggtcctatggataatttggat
tcagctacagcctctagttcaaaggatgcaattcagaatatcaactcgcaagtgatgcag
aacaatgttgccaataggtcaatgaatcagacctctagtcagtgccaagcaacaaatgaa
tgttttgaacagcctgcttttgcgcaaaataatggtgaaggctcagaagttgctgaaagt
ggagtgttgaagtcagctggtggaactgacatcacacctagtagagcaactggttgtgac
tga
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