Populus trichocarpa (black cottonwood): 7480707
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Entry
7480707 CDS
T01077
Name
(RefSeq) transcription factor PIF4 isoform X1
KO
K16189
phytochrome-interacting factor
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
7480707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
7480707
Transcription factors [BR:
pop03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
7480707
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GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
7480707
NCBI-ProteinID:
XP_006386276
UniProt:
B9GSQ9
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Position
2:complement(3776435..3780679)
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AA seq
530 aa
AA seq
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MNHCIPDWNLEGDLPVSNQKNPIEPDNELVELLWRNGQVVMHSQTQRKPNPHVQKHDSPT
VRGYDSTLNSSHLIQDDETVSWIHDPLEDSFEKEFCSNFFSELPPPLSDQISEEKSAKFD
ASKTSHQQQQLNNNKHPVVPEFPGNPMPPPRIQVQEQNHISVGGFGKAVNVNFSQFSAPL
KVGDFRSSSRQFGGQGSGDFSQGEARECSVVTVGSSNQTPRDRFLSRASGNAIETGTGLS
AGPSIDDPRKVISQSERGKGDQTLDPTATSSSGGSGSSFARTCKQSAVPSRGQKRKTMDA
EESECQSEDAELDSAVANKPAKRSGSTRRSRAAEVHNLSERRRRDRINEKMRALQELIPH
CNKTDKASMLDEAIEYLKSLQLQLQVMWMGSGIVPVMFPGVQHFMSRMGMGMGMGPPPLP
SMQNPMHLPRVPLVDQSISMTPTQNQAVICQTPVLNPVNYQNQMQNPTFSDQYARFMGFH
MQAASQPMNMFRFGSQTVQQNQMMAPPNSGGGPLSAGTAASDAPPSGKTG
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgaatcattgcattcctgattggaatcttgagggtgatcttcctgtctccaatcagaag
aaccccatagagccagacaatgagctagtagagctgctatggcgaaatgggcaggtggtt
atgcacagccaaacacaaagaaaaccaaatcctcacgttcaaaaacatgattcaccaaca
gtaaggggctatgactcaactctgaattcaagtcatttgattcaagatgatgagacagtt
tcttggattcatgaccctcttgaagattcctttgaaaaggagttctgttccaattttttc
tccgaattgccaccaccgctttctgatcaaatttcagaagaaaagtcggctaaatttgat
gcctcgaaaacttcacatcagcaacaacaactcaacaacaacaagcatccagtggttcct
gaatttccaggaaacccaatgccccctccaagaattcaagtccaggagcaaaatcatatt
agtgtaggaggatttggtaaagctgttaatgttaacttttctcagttctcagctccctta
aaagtgggtgattttagatcttcaagtcgacaatttggaggacaggggtctggagatttt
tcacaaggagaggccagggagtgctcggtggtgacagtagggtcaagcaaccaaactcca
cgtgaccgtttcctgagccgtgcttctggtaatgctattgagaccggtacaggcttgtct
gccggaccctccatagatgatccacgaaaagtaatctcccagagcgagagaggcaaaggt
gatcagacacttgatcccactgctacttcatcatcaggtgggtcaggtagtagttttgct
agaacatgtaagcaatctgcagtacctagtcgtggccagaaaagaaagaccatggacgcg
gaggaatctgagtgccaaagtgaggatgccgaacttgattcagcagtggcaaacaagcca
gccaaacgatcaggatctacccgcaggagccgtgctgctgaagtgcataacctctcagaa
aggagacggagggatagaattaatgagaagatgagagcattgcaagagctcatacctcac
tgcaacaagacagacaaagcatcaatgttagatgaggcaattgagtatctgaagtcactt
caattacaacttcaggtaatgtggatgggaagtgggattgtcccagtgatgtttccagga
gtgcagcatttcatgtcccgcatgggaatgggaatgggaatgggcccgcctcctttgcct
tctatgcaaaatcctatgcatttgcctagggtcccacttgttgatcaatccatttctatg
actcccacacagaaccaggcagttatttgccaaactccagtattgaatccagttaattat
caaaatcagatgcaaaatcctactttctctgatcagtatgcacgtttcatgggttttcat
atgcaagctgcttctcagcccatgaatatgttccggtttggctcgcaaacagtacagcag
aaccaaatgatggcaccaccaaacagtggcggtggacccttgagtgctggaactgcagcc
agtgatgctcctccgagtggcaagacgggttaa
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