Populus trichocarpa (black cottonwood): 7488744
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Entry
7488744 CDS
T01077
Name
(RefSeq) protein SIEL
KO
K13141
integrator complex subunit 4
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7488744
Spliceosome [BR:
pop03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
Integrator complex
7488744
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GFIT
Motif
Pfam:
HEAT
INTS4_C
HEAT_2
Cnd1
HEAT_GCN1_C
VPS15-like_hel
CEP104-like_TOG
RTP1_C1
HEAT_EZ
MMS19_N
ParcG
Motif
Other DBs
NCBI-GeneID:
7488744
NCBI-ProteinID:
XP_024443493
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All DBs
Position
16:13082319..13089730
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AA seq
948 aa
AA seq
DB search
MEHQLLHTCLQSLNDNNNPLSLQALASLRSLIINPNTSDSTIYSILETLTCSLQLRTNSL
TTHHHILKLLTDLASHRTHLSSQILNTIHYSSLLFTESIQIATESLTSLASIANSDHNKI
DDQLFMSLCFAATSTSARLRLLRNGERLGIGMHVLFTMFLGFTEDPYPYVRKASLDGLLG
LCKSGNVFEDISVIEGCYFRAVELLQDNEHSVRSAAIRVVSEWGQMLIAAKEENDKIDWS
NQVFVQLCSMVRDMSVEVRVEAFNALGKIKLVSEDILLQTISKKVLAIMKEKNSHGQCTA
ERFEILASSYAGAFVHGLEDEFHEVRKSACNSLRIHTILYAEFARRSLSLLMDMLNDDSM
AVRLEALETLHHMATFECLHVQEIHMHMFLGSLLDNCDLIRSIARKIFKLVKLSDFKLFR
SSIHGLLQNLERYTKDEADVFSVLFFMGRSHGNFAARVVKEVSQEIEPVLEGKLVLDSAR
VAAFLVLAISAPLSQNQNGQNIPPRLFSYAVTLLGRISSALREVVDQDTLLAYLSRCSRS
STRGTEVEESSLLPVVDDAVLTHSRKDVNNPVGVPMLQTGNETSKVQPVISCELEDLATS
IVECQADELDEVMKSVNLILARVRDAWLLVQSRCTNVAVRALRDCKRELAVLTSASLESA
GILAFTMQYLQVMKLFAKIWEHVVWKIRSDETGGLEYLFGKLDVRLRELRYRYIGFSKEE
ELYVLELIVVACMLRLSKVEICCSPTTLKKLSAIISHIEILNDKGPMEPSNILMDAKKTV
HEIESSKAGISCSLFLITNLVDFFTLKQFSLCPRVRHINAELDVPGNDSENPLPFVSGLP
VAIPLDITLYNVSSENRLWLTIRMSQESTQFVFLDSNILGGCNEVKKFTFMAPFYRTPKA
RSFSSWISIGMECALEDCHLVKHCGGPKRKLVYLCQEKEVHLCLVRRD
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggagcatcagttgcttcacacatgcctgcaatctctcaatgacaacaataatcctctc
tctctacaagccctagcttctcttcgctctctaataatcaaccctaacacctctgattcc
acgatctattcaatcctcgaaaccctgacttgctctctccaactccgcaccaactcactc
acaactcaccaccacatcctcaaactcctcactgaccttgcttcacaccgcactcacctc
tcctctcaaatcctcaacacaatccactatagctcgctcctctttacagagtcaattcaa
attgccaccgagtcactcacttcactcgcttcgattgccaattctgatcacaacaaaatc
gatgatcagttatttatgtccctgtgttttgctgccacttcaacttccgctcgattgcgg
ctgctcagaaatggagagaggttaggcatagggatgcacgtgctgtttactatgttttta
gggtttacggaagatccttacccatatgtgagaaaggcttctttggatggattgctaggg
ttgtgcaaaagtggcaatgtttttgaagatatcagtgtgattgaaggttgttatttccgt
gctgttgagcttctacaagataatgagcattcagtacgctctgctgcaatccgcgtggta
agtgaatgggggcaaatgcttatagcagcaaaggaagagaatgataaaatagattggtca
aatcaagtatttgtgcagctctgttctatggtaagagatatgagtgtggaggtcagggtg
gaagcttttaatgctcttggcaagataaagttggtgtctgaggacattttattgcaaact
atatcaaaaaaagtcctagcaatcatgaaagagaagaactctcatggtcagtgtacagca
gaaaggtttgagattttggcatctagttatgctggagcttttgtgcatgggcttgaggat
gaattccatgaggtgcgaaaatctgcttgtaactctttgcgcattcacactatcctctat
gctgagtttgctcgtcggtccttaagcttgttgatggacatgttgaatgatgattcaatg
gctgtaaggttagaagctttagaaacactgcatcacatggcaacctttgagtgtctgcat
gtgcaagagatacacatgcacatgtttctgggctctctacttgataactgtgatctaata
agatcaatcgcaagaaaaatttttaaattggtgaagctgtccgattttaaattatttaga
tcatctattcatggcctccttcagaacttggagagatatacaaaggatgaagctgatgtc
ttctctgttttgttttttatgggtcgaagccatgggaactttgctgctcgtgttgtcaag
gaagtttctcaagagatagagccagttttggagggaaaattggtcttggatagtgcaaga
gtagctgcgtttcttgtacttgccatctcagctccactctcacaaaatcagaatggtcaa
aacattccacctagattattttcttatgcagtaaccctgctagggaggatctcttctgct
ttgagagaagttgtagaccaagatacacttttggcatatttgtctcggtgcagtagatcc
tccactcgtggcacagaagtggaggagtcgtcattattgccagttgttgatgatgctgtt
ttaactcatagcagaaaggatgtcaataatcccgttggggtgcccatgctacaaactggc
aatgaaacttccaaagttcagcctgtgatatcatgtgaattagaggatttagcaacttca
attgtagaatgccaggcagacgagcttgacgaagtcatgaaatctgtgaaccttatcctt
gcaagggtcagagatgcctggcttttggtacaatcaaggtgcaccaatgtagcagtgaga
gctctgagggattgcaagagagaattggcagtgttaacctctgcatcgcttgaatctgct
ggtatattggcatttacgatgcaatacctccaggtaatgaaactgtttgctaagatatgg
gagcacgttgtatggaagataaggtccgatgaaacaggaggactggaatatctatttggg
aaactagacgtgaggctcagagaactgaggtatagatatatagggttttccaaggaagag
gagttgtatgtgttggagcttatagttgtggcctgtatgttaaggttatccaaagttgaa
atctgctgctctcctactacattgaaaaaattgtctgctataatttcacatatagagatt
ctcaatgataaaggacccatggaaccatccaatattttaatggacgctaagaaaacagtg
catgagattgagtcttctaaagctggtatctcatgcagtctcttcctgattacaaactta
gttgatttcttcacccttaagcagtttagtttatgcccaagagtaaggcatataaatgca
gaactggatgttcctggtaatgattctgaaaatcctcttccttttgtctctggactacct
gtggctatacctctggatattactttatacaatgtcagtagtgagaataggttgtggctt
acgataagaatgagtcaggagtcaactcaatttgtcttcttagattcgaacatattagga
ggctgcaatgaggtcaagaaatttacatttatggcacccttttacagaactccaaaagct
cgttcattctcatcatggattagtataggcatggaatgtgctcttgaggattgtcactta
gtgaaacactgtggaggtccaaaacgcaaattggtttatctttgccaggaaaaagaagtt
catttgtgcttggttcggagggactga
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