Populus trichocarpa (black cottonwood): 7493974
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Entry
7493974 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7493974 isoform X1
KO
K12173
BRCA1-A complex subunit BRE
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
7493974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7493974
03036 Chromosome and associated proteins [BR:
pop03036
]
7493974
03400 DNA repair and recombination proteins [BR:
pop03400
]
7493974
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
7493974
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
BRISC complex
7493974
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
7493974
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
7493974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRE
Motif
Other DBs
NCBI-GeneID:
7493974
NCBI-ProteinID:
XP_002307728
UniProt:
B9H4Y3
LinkDB
All DBs
Position
5:complement(23681872..23685982)
Genome browser
AA seq
379 aa
AA seq
DB search
MSYDGFPPFISAQLQYLLNHYPHTIQIEQARSGTRYFPGSLDRFTLLIPYCLDYMKWDVI
YNAEFPLAAPDVIFGAEDEDFHPFHVLCGEDGDSRLVKNSLTDWNNKDPTRLLALVIELR
DKYRSYQEKRVGEVDDDRLKFEISTIVSREGIEMHMSSGVEKPEEVKFAVPLMNMNINKM
VPACPWRHPQKIYLQVIYPVGRKYAPSPSAPRLKLMCTPELKALFSIDDVKLPSWLDGMC
MAEYLPHLEELLQRQVLEAVALIDVRRQFIEALAPLLGRPLEADPVFCRKASFLVCSGPF
TIMLHVFLSTNFPKQQPSLMFQSTQHFNSLGMPVKSPLITEYPWSPRWETSQMADRISDF
LVDESLNFKRHCNESHLQH
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgtcatatgatggattccctcctttcatctccgcccaactccagtacctcctcaatcac
tatcctcacacgatccagattgagcaggcacggtcaggcaccaggtacttccctggaagt
cttgatcgattcacattgctcattccttactgtttagactacatgaaatgggatgttata
tacaatgctgaatttccattagctgcaccggatgttatatttggtgctgaggatgaagat
ttccatccctttcatgtcctatgcggcgaggacggggattcgaggctagttaagaacagt
ttgaccgattggaacaataaagatcctacgcggctgttggctctcgtaattgaattgagg
gataaatataggtcttaccaggagaaacgagtgggagaagttgatgatgataggttgaag
tttgagattagtactattgtgtccagggagggaattgaaatgcatatgagttccggtgtt
gaaaagccagaagaggttaagtttgcagtgcctttaatgaacatgaatataaataaaatg
gtgcctgcatgcccctggagacatccacaaaagatatacttacaggttatatatcctgtt
ggtagaaagtatgcaccttctccctcagcacctcgtctgaaattaatgtgcactcctgag
ttgaaagccctgttttccattgatgatgtcaaacttccttcatggttggatggaatgtgc
atggctgaatatcttccccacctggaagaactccttcagagacaggtcttggaggcagtt
gctctaattgatgttagaaggcagtttatcgaggcattagccccactgcttggaaggcca
ctagaagctgatccagttttttgcagaaaggcttcttttcttgtctgctctggacccttt
acgatcatgctgcatgttttcctttcaaccaactttccaaaacagcagccttctctgatg
tttcaaagtacacagcatttcaattcccttggcatgccagtcaagtcgcctctcattaca
gagtatccatggagtcctagatgggaaacctcacaaatggctgaccggatctctgacttt
ttggtggatgagtcgctaaatttcaaaaggcactgcaacgaatctcaccttcaacactag
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