Populus trichocarpa (black cottonwood): 7497548
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Entry
7497548 CDS
T01077
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7497548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7497548
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
7497548
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
ORC-CDC6-like
Arf
AAA_15
AAA_30
AAA
AAA_23
nSTAND3
ATP-synt_ab
Zeta_toxin
AAA_28
TsaE
AAA_7
Motif
Other DBs
NCBI-GeneID:
7497548
NCBI-ProteinID:
XP_002303716
LinkDB
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Position
3:16692316..16693503
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AA seq
329 aa
AA seq
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MGDMEHQEPTIDINGLRFTYPGIDGHPPPGSKPLIDEFFLTLNSGDRCLLVGSNGAGKTT
ILKILGGKHMVEPQMVRVLGRSAFHDTAALTSSGHLSYLGGEWRREVAFAGFEVPIQMDI
SAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLRPFKVLLLDE
IMVDLDVLARADLLKFLRKECEERSATIIYATHIFDGLEEWPTHILYVAHGKLQFAMPMA
KIKETSNLSLMRTVESWLRKERDEERKRRQERKAGGLPEYEKQVEGSRVTGDPARVGARV
MNNGWAAGRLHSTIAGEENFFLSSNRVLR
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgggcgatatggagcatcaagaaccaacaatagatatcaacggcttgagattcacgtac
ccaggaatagacggtcacccaccgcctgggtccaaaccgttgatcgatgagttctttctc
accctcaattctggtgatcgatgccttcttgttggatccaacggcgctgggaaaactaca
attctgaagatattaggaggaaaacacatggtggaaccccaaatggttcgtgttctagga
aggtctgcttttcacgacactgctgctttaacttcttctggacatctttcttatcttgga
ggagagtggaggcgagaagttgcttttgctggttttgaggttccgatacaaatggatatt
tctgcggagaagatgatatttggggtggcaggtattgatcctcaaagaagagctgagcta
atcaaggtattggacattgatctgtcatggaggatgcacaaggtttctgatggccagaga
aggcgggtgcaaatttgcatgggtctcctgaggccattcaaggttcttcttcttgatgag
ataatggttgacctcgatgtgctagcaagggctgaccttctgaagtttctaagaaaggaa
tgtgaagagcgaagtgctacaattatctatgcaacacatatatttgatggtttggaggag
tggccaacgcatattttgtatgttgctcatgggaagttgcaattcgcaatgccaatggcc
aaaataaaagagactagtaatttgtcactaatgagaacagtggagagctggctgaggaag
gaaagagatgaggagaggaaaagaagacaagagagaaaggcaggaggtcttccagaatat
gaaaagcaggttgagggaagtcgagtgaccggtgatccagctcgtgttggtgctcgtgtt
atgaacaatggttgggctgcaggaaggctgcactccaccattgcgggtgaagagaacttc
ttcttgagctcaaacagagttttgagatag
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