Porphyrobacter sp. CACIAM 03H1: CBR61_11560 Help Entry CBR61_11560       CDS       T09981                                  Name (GenBank) DNA ligase (NAD(+)) LigA   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism porc  Porphyrobacter sp. CACIAM 03H1 Pathway porc03030   DNA replication porc03410   Base excision repair porc03420   Nucleotide excision repair porc03430   Mismatch repair Brite KEGG Orthology (KO) [BR:porc00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     CBR61_11560    03410 Base excision repair     CBR61_11560    03420 Nucleotide excision repair     CBR61_11560    03430 Mismatch repair     CBR61_11560  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:porc03032]     CBR61_11560    03400 DNA repair and recombination proteins [BR:porc03400]     CBR61_11560 Enzymes [BR:porc01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      CBR61_11560 DNA replication proteins [BR:porc03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      CBR61_11560 DNA repair and recombination proteins [BR:porc03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      CBR61_11560    NER (nucleotide excision repair)     GGR (global genome repair) factors      CBR61_11560    MMR (mismatch excision repair)     DNA ligase      CBR61_11560   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       CBR61_11560 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden OB_DNA_ligase HHH_2 DNA_ligase_ZBD BRCT PTCB-BRCT HHH Nlig-Ia Motif Other DBs NCBI-ProteinID:  ASJ91491 LinkDB All DBs Position complement(2416858..2419020) Genome browser AA seq 720 aa AA seqDB search MTDVQTLSEAEAANELMRLARAIARHDRLYHAEDSPEITDAEYDALVRRNAEIEAAFPHL VREDSPSRKVGHAIGASPLGKVTHEVRMMSLDNAFSPEEVAEWLARMRRFLNLPDDAPLA CTAEDKIDGLSCSLRYENGRLVRAATRGDGQVGEDVTANVAHIPDIPQQLPAGVPAIFEV RGEVYMEKQAFTALNAAQHEAGGKIFANPRNAAAGSLRQKDAGVTAKRPLRFWAHGWGAA SEVPGATQSEVVAKLREWGFPVSPLFTRIEGDADALIAHFDAIGAARPSLAYDIDGVVYK LDRLDWQERLGFVAKAPRWALAHKFPAERAETIVQGIDIQVGRTGKLTPVGRLAPVLVGG VTVTNVTLHNRDEIARLGLRVGDRVVIQRAGDVIPQVVENLTREEDRPAFAFPDHCPDCG SEAVAEEGEVDVRCTAGLICPAQRTQRLEHFVSRKALDIEGLGEKTIAQFFALGWLESPA DIYRLRRRRADILALEGWQEKSVDNLLAAIEAKRAPDAARLLFALGIRHVGEVTARDLMK HVHELPALRAMATLANADRLPFASSEVERQMHSVSTALDGNGDIAAQARAELTAIDGIGP SVVEALGDFFHEPHNVAVWEDLLNEVSPPRYEVRTVASRVAGKTVVFTGKLETMSRDEAK AQAERLGAKAAGSVSAKTDLLVAGPGAGSKLKKAAELGIETTDEAGWAAIVAEALGGGAV NT seq 2163 nt NT seq  +upstreamnt  +downstreamnt atgaccgacgttcagaccctctcggaagccgaagccgccaacgagctgatgcgcctcgcg cgggccattgcgcggcatgaccggctctatcacgccgaggactcgcccgagatcaccgac gcggaatacgacgcgctggtgcgacgcaatgcggagatcgaggcggccttcccgcatctg gtgcgcgaggacagcccctcgcggaaggtcggccacgccatcggcgcctcgccgctcggc aaggtgacgcacgaggttcgcatgatgagcctcgacaacgccttctcccccgaggaggtc gccgagtggctggcgcggatgcggcggttccttaacctgccggacgacgcgccgctggcc tgtaccgccgaggacaagatcgacgggctgtcctgctcgctgcgctacgagaacggcagg ctggtgcgcgccgcgacgcgcggtgacgggcaggtgggcgaggacgtgacggccaatgtc gcgcacatccccgacattccgcagcagctccccgcgggcgtccccgccatcttcgaggtg cgcggagaggtctatatggaaaaacaggcctttaccgcactcaatgctgcgcagcatgaa gcgggcgggaagatcttcgcaaacccccgcaatgccgccgccggaagcctccgccagaag gatgccggcgtcaccgccaagcgccccctgcgcttctgggcgcatggctggggtgcggcc tccgaggtgccgggggcgacccagagcgaggttgtggcgaagctgcgggagtggggtttc ccggtctcgccgctgttcacccgcatcgagggcgatgccgacgcgctgatcgcccatttc gatgccatcggcgccgcgcggccgagcctcgcctatgacatcgacggggtggtctacaag ctcgatcggctcgactggcaggagcgcctcggcttcgtcgccaaggccccgcgctgggcg ctggcgcacaagttcccggcggagcgtgccgaaaccatcgtgcagggcatcgacatccag gtcggacgcaccggcaagctgacgcctgtgggtcgcctcgccccggtgctggtcggcggc gtcaccgtaaccaacgtcacgctccacaaccgcgacgagatcgcgcggctcgggcttcgc gtcggcgaccgcgtggtgatccagcgcgccggcgacgttatcccgcaggtggtcgagaac ctcacccgcgaggaagatcgccccgccttcgccttccccgaccactgccccgattgcggc agcgaggcggtggcggaggagggcgaggtcgatgtgcgctgcaccgcaggcctcatctgc ccggcgcagcgcacccagcggctcgaacattttgtcagccgcaaggcgctcgatatcgag ggtctgggcgagaagaccatcgcccagttcttcgcgctcggctggctcgaaagccccgcc gacatctaccgcctgagaaggcgccgcgccgacattcttgcgctggagggctggcaggaa aagtcggtcgacaacctcctcgccgcgatcgaggccaagcgcgcccccgatgccgcgcgg ctgctcttcgcgctcggcatccgccatgtcggcgaggtgaccgcgcgcgacctgatgaag catgtccacgagcttccggcgctgcgggcgatggcgacgctcgccaacgcggatcgcctc ccgttcgcctcgagcgaagtcgagaggcagatgcacagtgtctcgactgcgctcgacggg aacggagacatcgcggcgcaggcccgcgccgaactcaccgccatcgacggcatcggcccc tcggtggtcgaggcgctcggcgacttcttccacgaaccgcacaatgttgcggtgtgggag gacctgctgaacgaggtcagcccgccgcgctacgaggtgcggaccgtcgcatcccgcgtt gcaggcaagacggtcgtcttcaccggcaagctcgaaaccatgagccgcgacgaggccaag gcccaggccgaacgcctcggcgcgaaggcggccggcagcgtcagcgccaagaccgacctt ctggtcgcagggccgggggctggatcgaagctcaagaaggccgccgaactcgggatcgag accaccgacgaggcgggctgggcggcgatcgtggcagaggcgctgggcggcggcgcggtt tga

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