Panulirus ornatus (ornate spiny lobster): 139758159
Help
Entry
139758159 CDS
T10834
Symbol
DNAlig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
porn Panulirus ornatus (ornate spiny lobster)
Pathway
porn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
porn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
139758159 (DNAlig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
porn03400
]
139758159 (DNAlig4)
Enzymes [BR:
porn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
139758159 (DNAlig4)
DNA repair and recombination proteins [BR:
porn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
139758159 (DNAlig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
RNA_ligase
DNA_ligase_IV
LIG3_BRCT
mRNA_cap_enzyme
PTCB-BRCT
YfeC-like
Motif
Other DBs
NCBI-GeneID:
139758159
NCBI-ProteinID:
XP_071535419
LinkDB
All DBs
Position
29:16859039..16891976
Genome browser
AA seq
885 aa
AA seq
DB search
MSGSTFIASIIPWSQVCRMLDKVQSAVRASKKEMLLKFIKQFRELLKKKLEQNPSAPDSF
FPVLRILLPALDRARGAYGVKERKLAELYIRILGLKKEGNDAQKLLHFRKPKSTSGGDGD
FAEVAYYVLKNRCPDKGEMSLHDVDTQLTSIAENYAAKKHEDVERSLLTMLRNMTATEQK
WLIRVLLKDMRLGIGQSAIFNAWHPDAKDYYDVNNNLEKVCKTLRDPSVRLHEIEVSLFS
AFRPMLAERAVLEKVEAQMEHKLFYAETKFDGERSQIHKKGNVYKYFSRNGFDFTSNFGG
DKDSGLFTPHLHPLFPPHVKEAILDGEMVGWSKTHNAIVSKGEHMDVKNLKEGGDWHVCF
CVFDIIYLNGKVLTNLPLSQRLEKLETVLKPQEGRVMFSPKAQVKSKEDVVKILNKAIDN
REEGVVLKDPDSVYRPAARKAGWIKVKPEYVDSLVPELDLLIIGAYFGKGRHQGVLSHFL
LGVAVPSVEPGGKPSEFHSVSRVGSGYTQAELGELLDKLNPYKVGHQPRNVFVSREKPEV
WFDPLKSFIVQVRAAEIVKSDLYRTGVTLRFPRVEKVRYDKPWYDTLTTKELDQLVQEAS
GKLATKHYIEANNEPSAKRKTPTKAEQPSLPLHFRPADLSKVVKKDEIFSGLEMCVMGNS
EDHTKQELETLVVEHGGSFTQHPGQNTHCIVTDTISVRVKNYVLSSKHNIVRPSWIISCT
ESGCLLPWCPLDVIHLQDKEQEYMRDLFDEFGDSYTEPTDEKSLKRIMDSMKKESWCPLS
VERMCELDEKICDPGDTRGLFRRIKAYFCDSEEQKLAALTLQLHGGFVCDSMSSATHIVT
GIESSQRQSEMNGRHLVTTEWIYACLKAGKNLEERYYMPKIIVLK
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggtccactttcatagcatccatcataccatggtctcaggtttgccgaatgctt
gacaaggttcagtctgctgttagagcctcgaagaaggaaatgcttctcaagtttatcaaa
cagttccgagagcttcttaaaaagaaactggagcaaaatccaagtgctcctgacagcttc
tttcctgtgctacggatactgctgccagccctggatcgggcaagaggggcctatggtgtt
aaagaacgcaaattagctgaattgtacatacgcatactgggtctgaagaaggaaggcaat
gatgctcagaaacttttacatttccgtaagcccaaatcaacatcagggggtgatggagat
tttgctgaggtggcatactatgtgctaaagaatcgctgtcctgacaaaggggaaatgtca
ctacatgatgttgacacacagcttacatcaattgctgagaattatgctgcaaagaagcat
gaggatgttgaacgttcgttgctaactatgctgcgcaacatgacagcaactgagcagaag
tggttgatacgagttttattgaaagatatgcgccttggcattggtcagagtgccattttc
aatgcatggcatccagatgctaaagattattatgatgttaacaacaaccttgagaaggtt
tgcaaaactctacgagatcctagcgtgcgtctccatgagattgaagtatcattgttttct
gcattccgtcccatgttggcagaaagagcagtgctagagaaagtagaggcacaaatggaa
cacaagcttttttatgcagagacaaaatttgatggagaaaggtcccaaatccataaaaaa
ggaaatgtttacaagtacttttcacgaaatggttttgatttcactagtaattttggtggt
gataaagattctggtcttttcacgccacatcttcaccctctgttccctcctcatgtaaaa
gaagccatactggatggagaaatggttggctggagcaaaacacataatgcaattgtcagc
aaaggtgagcatatggatgtgaagaatttgaaggaaggtggtgactggcatgtctgcttt
tgtgtctttgacataatctatctgaatggaaaggtgttgactaacctgcctttgtctcaa
cgcttggagaagctcgaaacagtactcaagcctcaggaaggccgagttatgttttctcca
aaagctcaagtcaaatccaaagaggatgtggtaaagattttgaataaagccatagacaac
agggaggagggtgttgttctcaaagacccagactcagtatatcgtcctgctgcacgtaaa
gctgggtggattaaagtcaagcctgagtatgttgactccctcgtgcctgagcttgatctg
ctgatcattggggcttactttggaaagggtcgacaccaaggtgtgctctctcattttttg
cttggtgttgctgtccctagtgtggagccaggtggtaagccatctgagttccactctgtc
agccgtgtgggatctggttacactcaggctgagcttggagaacttttggataagcttaat
ccatataaagttggccatcaacctcgaaatgtttttgtgtcaagggagaaacctgaagtg
tggtttgaccctctcaagtcatttattgtgcaggtcagggcagctgaaatagtaaagagt
gatttgtaccgaacaggagtgacattaaggttcccaagagttgagaaagtacgctatgat
aagccatggtacgacaccctcaccacaaaagagttagatcaacttgtacaggaagctagt
ggcaaattggccacaaagcattatatagaagccaataatgagccttcagccaagcgaaag
accccaaccaaagcagagcaaccttcactgcccctacacttcagaccagcagatctgtca
aaagtggtgaagaaagatgagatattctctgggcttgagatgtgtgtgatggggaatagc
gaggaccacacaaaacaggaacttgaaactctggtggtggagcatggaggctcctttact
cagcaccctggtcagaacactcattgcatagtaacagataccatttctgtccgtgtgaag
aattatgttctctcatcaaaacacaatattgtacgaccttcatggattatatcatgtacc
gaaagtggttgtcttctgccctggtgtccattggatgtaatacaccttcaagacaaagaa
caggaatacatgagggacttatttgatgagtttggagacagctacactgaaccaacagat
gaaaagagtcttaaaagaattatggacagtatgaagaaagagtcatggtgcccactatcg
gttgaaagaatgtgtgaattggatgaaaagatatgtgacccaggtgatactcggggtctc
ttccgacggattaaggcatatttttgtgacagtgaggagcagaagcttgcagcactcact
ctacaactccatggtggctttgtgtgtgattccatgagtagtgccacacacattgtgaca
gggattgaaagcagtcaacgtcaaagtgagatgaatggtcgacacttggttactacagag
tggatttacgcatgcctgaaggctggaaagaatttagaagaaaggtactacatgccaaag
ataatagttttaaagtaa
DBGET
integrated database retrieval system
