Porphyromonas sp. oral taxon 275: J4862_03540
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Entry
J4862_03540 CDS
T08761
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
porp
Porphyromonas sp. oral taxon 275
Pathway
porp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
porp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
J4862_03540 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
porp03400
]
J4862_03540 (nth)
Enzymes [BR:
porp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
J4862_03540 (nth)
DNA repair and recombination proteins [BR:
porp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
J4862_03540 (nth)
Prokaryotic type
J4862_03540 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_8
HHH_5
DUF2400
Motif
Other DBs
NCBI-ProteinID:
QUB43701
LinkDB
All DBs
Position
complement(887557..888222)
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AA seq
221 aa
AA seq
DB search
MTRSERYRGVIAWFEEHMPVAETELDYRSPFELLVAVILSAQCTDKRVNLVTPALFLQYP
TAELMAQAEVEDIFELIRSISYPKAKAGYLVGTAQRLVADYGGEVPEEREELMKLPGVGR
KTANVIASVIFQQPTMAVDTHVFRVANRIGLTTNSRTPLATELTLIKYIPEELIPKAHHW
LILHGRYVCLARKPKCSECGLSSLCRYYAAAQRKQSKSSKN
NT seq
666 nt
NT seq
+upstream
nt +downstream
nt
gtgacacgcagcgagcgctataggggcgtcatagcatggttcgaggagcacatgccagtg
gccgagacggagctggactaccgcagccccttcgagctcctggtggccgtcatcctctcg
gcacagtgcacggacaagcgggtgaacctcgtgacgcccgccctcttcctccagtacccg
acggctgagctgatggctcaggctgaggtggaggacatcttcgagctcatccgcagcatc
agctaccccaaggccaaggcgggctacctcgtcggcacagcgcagcgcctcgtcgcggac
tacggcggtgaggtacccgaggagcgagaggagctgatgaagctgccgggggtcggacgc
aagaccgccaacgtcatcgcctccgtcatcttccagcagccgacgatggccgtcgacacc
cacgtcttccgcgtggcgaaccgcatcgggctgacgacgaactccaggacgccgctcgcc
accgagctcaccctcatcaagtacatccccgaggagcttatccccaaggcgcaccactgg
ctcatcctccacgggcgctatgtctgcctagctcgcaagcctaagtgctcggagtgcgga
ctgagctccctctgccgctactacgctgcggcccaacgtaagcaaagcaaatcatcaaag
aactag
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