Pseudomonas oryziphila: EJA05_19740
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Entry
EJA05_19740 CDS
T07791
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pory
Pseudomonas oryziphila
Pathway
pory03030
DNA replication
pory03410
Base excision repair
pory03420
Nucleotide excision repair
pory03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pory00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EJA05_19740 (ligA)
03410 Base excision repair
EJA05_19740 (ligA)
03420 Nucleotide excision repair
EJA05_19740 (ligA)
03430 Mismatch repair
EJA05_19740 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pory03032
]
EJA05_19740 (ligA)
03400 DNA repair and recombination proteins [BR:
pory03400
]
EJA05_19740 (ligA)
Enzymes [BR:
pory01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EJA05_19740 (ligA)
DNA replication proteins [BR:
pory03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EJA05_19740 (ligA)
DNA repair and recombination proteins [BR:
pory03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EJA05_19740 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EJA05_19740 (ligA)
MMR (mismatch excision repair)
DNA ligase
EJA05_19740 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EJA05_19740 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AZL69816
UniProt:
A0A3Q8U279
LinkDB
All DBs
Position
complement(4212079..4214433)
Genome browser
AA seq
784 aa
AA seq
DB search
MNAETRIHELRAELDQHNHRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQR
VGGAALAAFSQVRHEVPMLSLGNAFEEDDLRDFDRRVVEGLDLPGGDLFAARAAVDYSCE
PKLDGLAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGEGWPAVLEVRGE
VYMSKAGFDRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSEP
FGDSHIGILEKLRGWGLPISRELRHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSL
AAQRELGFRAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVS
NATLHNMDEVARLGLCIGDTVIIRRAGDVIPQVMQVVAERRPADARPVQVPSACPVCGSQ
VERTQLVKRSKGKATTSEGAVYRCVGRLSCAAQLKQAIIHYVSRRAMDIDGLGEKSVEQL
VDEGLIRSPADLYKLEFEQVVALEGFAEVSSRKLLEAIEASKRPPLARFIFALGIPDVGE
ETAKVLARSLGSLARVQVALPQVLTYLPDIGLEVAYEIHNFFEAEHNREVIEQLLVSGMQ
LQDEGELAAEFAACTTLAGMLAKLDIPSVGPTGAEKLVDKLGTLDKIIAADGIDLRQALN
TKQAEGVREFFKVEANQQLARAIEAQLLEFGMHWSCEKKTAEGLPLAGQTWVLTGTLERM
SRDVAKEKLESLGAKVSGSVSGKTHCVVAGPGAGSKLAKAGELGVKVLDEEQFVAFMAGQ
GINL
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccgaaacccgaatccatgaactgcgcgccgagctcgaccagcacaaccaccgc
tactacgtgctcgacgagcccagtgtgccggacgccgagtacgaccggctgttcaatgaa
ctcaaggcgctggaggccgagcacccgcacctggtgacccccgactcgcccactcagcgg
gtaggcggtgcggcgctggcggcgttcagccaggtgcgccacgaagtgcccatgctcagc
ctgggcaacgccttcgaagaagacgatttgcgtgatttcgaccgtcgcgtggtcgagggc
ctcgaccttcccggcggcgatctgttcgctgcccgcgccgctgtcgattacagctgcgaa
cccaagctcgacggcctggcggtcagcttgctgtatcgcgacggccagctggtgcagggg
gctacccgcggcgacggcaccaccggcgaagacatcagcgccaacgtgcgtaccgtgcgc
aacattccgctcaagctgcagggcgagggctggccggcagtgctggaggtgcgtggcgag
gtgtacatgagcaaggctggtttcgaccggctcaacgctgcccaggccgaagccggtggc
aagaccttcgccaacccgcgcaacgctgccgccggcagcctgcgccaactggactcgaag
atcaccgccagccgcccgctggagttctgctgctatggcgtcggccaggtgtcggagcct
ttcggtgacagccatatcggcattctcgagaagctcaggggctggggcctgcccatcagc
cgcgagctgcggcacgcggctggcatcgaagagtgcctggcttactaccgggatatcggc
gagcggcgcaatagcctgccctacgagatcgacggggtggtgttcaaggtcaacagcctg
gccgcgcagcgcgagctgggtttccgcgcccgtgaaccgcgctgggcgatcgcccacaag
ttcccggccatggaagagctcaccgaggtgctcgacgtcgagtttcaggtcggccgtacc
ggcgcggtaacgcccgtggcgcggttgaaaccggtcaaggtggccggggttaccgtgtcc
aatgccaccctgcacaacatggatgaagtcgcccgtcttggcctgtgcatcggcgacacg
gtcatcatccgccgtgccggcgacgtgatcccgcaggtgatgcaagtggtggccgagcgt
cgcccggccgatgctcggccggtgcaggtgcccagcgcctgcccggtgtgcggctcgcag
gtcgagcgcacgcagctggtcaagcgcagcaagggcaaggcgaccaccagcgaaggcgcg
gtgtaccgctgtgtcggccgcttgagctgcgcagcccagctcaagcaggcgatcatccac
tatgtgtcgcgccgggccatggacatcgacggcctgggcgagaagagcgtcgagcaactg
gtcgacgaaggcctgatccgctcgccggccgacctctacaagcttgagttcgagcaagtg
gtcgcgctggaaggcttcgccgaggtgtccagccgcaaattgctcgaagccatcgaggcc
agcaagcgtccgcccctggcgcgcttcatctttgccctgggcatccccgatgtcggcgag
gagaccgccaaggtgttggcccgttcgctgggcagcctggcgcgggtacaggtggcgctg
ccccaggtgctcacctacctgccggacattggcctggaagtggcctacgagatccacaac
ttcttcgaggccgagcacaaccgcgaagtgatcgagcaattgctggtcagtggcatgcag
ttgcaggacgagggcgagctcgccgccgagttcgccgcctgcaccaccctggccgggatg
ctggccaagctcgacatcccttcggtcggcccgaccggtgccgagaagttggtggacaag
ctgggcacgctggacaagatcatcgccgccgacggcatcgatttgcgtcaggcgttgaat
accaaacaggccgagggtgtgcgcgagttcttcaaggtggaagccaaccagcagttggcc
cgggccatcgaagcccagttgctcgaattcggcatgcactggtcctgcgagaagaaaacc
gccgagggcctgcccctggccggccagacctgggtgctgaccggcacgctggagcgcatg
agccgggatgtcgccaaggagaagctggaaagcctgggggcgaaagtgtcgggctcggtt
tctggcaagacccactgcgtggtcgccggccccggtgccggctcgaagctggccaaggcc
ggtgagctgggggtcaaggtgctggacgaggaacagttcgtggccttcatggccgggcag
ggcattaacctctaa
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