Porphyrobacter sp. YT40: E2E27_10410
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Entry
E2E27_10410 CDS
T06153
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pot
Porphyrobacter sp. YT40
Pathway
pot03030
DNA replication
pot03410
Base excision repair
pot03420
Nucleotide excision repair
pot03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E2E27_10410 (ligA)
03410 Base excision repair
E2E27_10410 (ligA)
03420 Nucleotide excision repair
E2E27_10410 (ligA)
03430 Mismatch repair
E2E27_10410 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pot03032
]
E2E27_10410 (ligA)
03400 DNA repair and recombination proteins [BR:
pot03400
]
E2E27_10410 (ligA)
Enzymes [BR:
pot01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E2E27_10410 (ligA)
DNA replication proteins [BR:
pot03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E2E27_10410 (ligA)
DNA repair and recombination proteins [BR:
pot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E2E27_10410 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E2E27_10410 (ligA)
MMR (mismatch excision repair)
DNA ligase
E2E27_10410 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E2E27_10410 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QDH34696
LinkDB
All DBs
Position
2224838..2226901
Genome browser
AA seq
687 aa
AA seq
DB search
MPVELSEAEAANELMRLAKAIAHHDRLYHAEDSPEISDAEYDALVRRNAELEAAFPHLVR
ADSPSQKVGHAIAASPLGKVTHEVRMMSLDNAFSPEEVAEWLARMRRFLNLPEGEPLAVT
TEDKIDGLSCSLRYENGKLVRAATRGDGQVGEDVTANVAHISDIPQQLPEGVPEVFEVRG
EVYMEKQAFTALNAAQHEAGGKLFANPRNAAAGSLRQKDANVTAKRPLRFWAHGWGAASA
VPGATQTEVVETLKAWGFPVSPLFARVEGGAEALVARFDAIGTARPDLPYDIDGVVYKLD
RLDWQERLGFVAKAPRWALAHKFPAERAETVVEAIDIQVGRTGKLTPVGRLAPVLVGGVT
VTNVTLHNRDEIARLGLRVGDRVVIQRAGDVIPQVVENLTRDEDRPAFAFPDHCPECGSE
AVAEEGEVDVRCTGGLICPAQRTQRLEHFVSRKALDIEGLGEKTIAQFFALGWLESPADI
YRLRKRRSDILALEGWQEKSVDNLLAAIEAKRAPDAARLLFGLGIRHVGEVTARDLMKHL
HELPALRTLAERAHAGDAEAIAEITAIDGIGPSVVEALGDFFHEPHNVAVWEDILSEVSP
PRFEVKTVASRVAGKTVVFTGKLETMSRDEAKAQAERLGAKAAGSVSAKTDLLVAGPGAG
SKLKKAAELGIEVVDEAGWAAIVAEAG
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgccggttgagctctccgaggctgaggctgccaatgagctgatgcggctcgccaaggcc
atcgcgcatcacgaccggctctaccatgccgaggattcgcccgagatttccgacgcggaa
tatgacgcgctggtgcgccgcaatgccgagttggaggcggctttcccgcatctggtgcgc
gcggattcgccgtcgcagaaggtcggccatgcgatcgcggcctcaccgctcggcaaggtc
acacacgaggttcgcatgatgagcctcgacaatgccttcagccccgaggaagtcgccgag
tggctggcgcggatgcggcggttcctcaacctgcccgagggtgagccgctggcggtcacc
accgaagacaagatcgatggcctctcctgctcgctgcgttacgagaacggcaagttggtg
cgcgccgcgacgcgcggtgacgggcaggtgggcgaagacgtgacggccaatgtcgcgcac
atctccgacatcccgcagcagctcccggaaggcgtgcccgaggtgttcgaagtgcgcggg
gaggtctatatggaaaaacaggcctttaccgcactcaatgctgcgcagcatgaagcgggt
ggaaagctgtttgccaatccgcgcaacgccgctgccgggagcctcaggcagaaggatgcg
aacgtcacggcgaagcgtccgctgcggttctgggcgcatggctggggcgcagcctcggcg
gtgccgggggcgacccagaccgaggtggtcgagaccttgaaggcatggggcttccccgtg
tcgccgttgttcgcgcgggtggagggcggggcggaggccttggtcgcgcgcttcgacgcg
atcggcacggcgcggcccgatctgccctatgatatcgacggcgtggtctacaagctcgac
cggctcgactggcaggagcggttgggcttcgtcgccaaggccccgcgctgggcgctggcg
cacaagttcccggccgagcgcgccgagacggtggtggaggcgatcgacatccaggtgggc
cgcaccgggaagctcacccctgtcggcaggctggcgccggtgctggtgggcggtgtcacc
gtcaccaacgtcacgctccacaaccgcgacgagatcgcgcggctgggcctgcgcgttggc
gaccgcgtagtgatccagcgcgcgggcgatgtgatcccgcaggtggtggagaacctgacc
cgcgatgaggatcgccccgctttcgccttccccgaccactgccccgaatgcggtagcgag
gcggtcgcggaagagggtgaggtcgatgtgcgctgcaccggcgggctgatctgcccggcg
cagcgcacccagcggctcgaacacttcgtcagccgcaaggcgctcgatatcgaggggctg
ggcgagaagaccatcgcgcagttcttcgcgctgggctggctcgaaagccccgccgacatc
taccgcctgcgcaagcgccgcagcgatattctggcgctggaaggctggcaggagaagtcg
gtcgacaatctgctcgccgcgatcgaggccaagcgcgcgcccgatgcggcgcggctgctg
ttcggccttggcatccgccatgtcggcgaggtcaccgcgcgcgatctgatgaagcacctg
cacgagttgcccgctctgcgcaccctcgccgagcgcgcccatgcgggcgatgcggaagcc
attgcggagatcaccgccatcgacggcattggccccagcgtggtcgaggcgctcggcgat
ttcttccacgaaccgcacaatgtcgcggtgtgggaggatatcctctccgaagtctccccg
ccgcgcttcgaggtcaagaccgtcgccagccgcgtggcgggcaagaccgtcgtcttcacc
ggcaagctcgagaccatgagccgcgacgaggcaaaggcgcaggccgaacgcctgggcgcc
aaggcggcgggcagcgtttctgcgaaaaccgacctgctggttgccgggccgggggcggga
tcgaagctcaagaaggccgccgaactcggcatcgaggtggtcgacgaggcaggctgggcg
gcgatcgtcgccgaggccggttga
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