Paralichthys olivaceus (Japanese flounder): 109627896
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Entry
109627896 CDS
T06037
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov04115
p53 signaling pathway
pov04145
Phagosome
pov04148
Efferocytosis
pov04350
TGF-beta signaling pathway
pov04510
Focal adhesion
pov04512
ECM-receptor interaction
pov04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
109627896
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109627896
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
109627896
04148 Efferocytosis
109627896
09143 Cell growth and death
04115 p53 signaling pathway
109627896
09144 Cellular community - eukaryotes
04510 Focal adhesion
109627896
09142 Cell motility
04820 Cytoskeleton in muscle cells
109627896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pov04131
]
109627896
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pov00536
]
109627896
Membrane trafficking [BR:
pov04131
]
Endocytosis
Phagocytosis
Opsonins
109627896
Glycosaminoglycan binding proteins [BR:
pov00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109627896
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_ADAMTS
EGF_3
TSP1_CFP_C
EGF_CA
EGF
cEGF
TSP1_CCN
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
109627896
NCBI-ProteinID:
XP_019940276
LinkDB
All DBs
Position
Unknown
AA seq
1258 aa
AA seq
DB search
MESGKHIHPCKELQEMLLLIAVAQWAVHPCVMPPNGSTTGKCQSRDFGICKPKKAKQNAS
ASPLNMTQHITKRTSRLRRTSNEARLSVNTTLHERTVSLSVSLSHRELESRDDNSVYDLF
DLAQVSKRNHGVSVVKGADPYSPAYKVLNPDLIPPVPDSSFRDLLDSIQAERGFLLLLNL
KQFKRSRGSLLTIEKNDGSGPIFEVISNGKASTLDVVYSTMSQQQVVSIEDADLATGHWK
NITLFVQDDRVQLFVGCEEINVSELDVPIQKVLTQEVADIARLRIGKGAVKERFMGVLQN
VRFVFGTTLDAILRNKGCQSGASLSDVMTLDNPVNGSSPAIRTDFTGHKSKDVQSVCGLS
CEDITSMFKELKSLGVVVKQLSHKLSKVSEDSNLLMNQMKIHRGVCFHNGVVYKDKDEWT
VDGCTECTCQNSATVCRKISCPLIPCANATVPDGECCPRCGTQNYEEDGWSPWSEWTHCS
VTCGRGIQQRGRSCDRINSNCEGTSVQTRDCYPQECDKRFKQDGGWSHWSPWSSCSVTCG
EGVITRIRLCNSPTPQLGGRDCEGEGRQTEICQKSPCPINGGWGPWSPWDTCTVTCGGGV
QTRKRLCSDPVPKYGGKDCVGDATMSQLCNKQDCPIDGCLSSPCFSGAKCTSFPDGSFRC
GKCPLGYRGNGVICKDIDECKEVPDACHTHNGIHRCENTAPGYNCLPCPTRFSGLQPFGR
GVEQATAKKQVCMPRNPCQDGSHNCNKNAKCIYLGVYSESMFRCECKPGYAGNGRICGED
TDLDGWPNTDLLCVENATYHCKKDNCPNLPNSGQEDHDKDGLGDECDHDDDNDGIPDDRD
NCPRVYNPAQYDADRDDVGDSCDNCVFEANADQTDTDNNGEGDACAVDIDGDGILNENDN
CPYVYNVDQRDTDRDGVGDHCDNCPLEHNPDQIDSDSDLIGDKCDNNQDIDEDGHQNNLD
NCPYIPNANQADHDKDGKGDACDHDDDNDGIPDDKDNCRLAFNPDQLDSDGDGRGDVCKD
DFDQDNVLDIYDVCPENFAISETDFRRFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNC
DPGIAVGYDEFSAVDFSGTFFINTDRDDDYAGFVFGYQSSSRFYTVMWKQITQTYWSHTP
TRAQGYSGLSIKVVNSTTGPGEHLRNALWHTGDTSGQVRTLWHDPKNIGWKDFTAYRWHL
IHRPKTGLIRVVMYEGKRIMADSGNIFDKTYAGGRLGLYVFSQEMVYFSDLKYECRDT
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atggagtctggaaaacatatacatccctgcaaggagctccaggagatgctgctgctcatt
gctgtggcccagtgggcagtgcacccctgtgttatgcctcccaatgggagcaccaccgga
aagtgtcagtcacgagactttggcatctgcaaaccgaagaaagcaaaacaaaacgcttct
gcttctccacttaacatgacacagcacattaccaagcggacaagtcgactgcgcaggacc
tccaatgaggctcgactgtctgtaaacacaacactgcacgagaggactgtcagcctcagt
gtttccttgagccacagagagcttgagagtcgtgatgataacagtgtgtacgacttattt
gacctggcacaagtcagcaagagaaaccatggggtgagcgtggtgaagggtgcagacccc
tacagccctgcatacaaggtcctgaacccagacctgatcccccctgtcccagacagctcc
ttcagggacctcctcgactccatccaggccgagaggggcttcctcctcctcctcaacctc
aagcagtttaagaggagccgcggcagcctcctcaccatcgagaagaacgacgggtccgga
ccaatctttgaggtcatctccaatggcaaggcaagcaccctcgacgtggtctactccacc
atgagccagcaacaggtggtgtcaatcgaggacgcagacttggcaaccggacactggaag
aacatcacgttgtttgtgcaggatgaccgcgttcagctctttgtcggctgtgaggagatc
aacgtgtcagagctggacgtgcccatccagaaggtgctgacccaagaggtggcagacatc
gccaggctcaggattggaaagggagctgtgaaggagagattcatgggagtccttcagaat
gtgcgctttgtctttgggacaactcttgatgccatactgagaaataaaggttgccagagt
ggagcatctttatctgatgtcatgaccttggacaacccagtcaacggctccagtcctgcc
attaggactgatttcaccggccacaaatccaaagatgtgcagtctgtctgtggcctctcc
tgtgaggacatcaccagcatgtttaaggagctcaagagtctcggtgtagttgtcaaacag
ctgtcgcacaagctcagcaaagtgtctgaggacagcaatctgctgatgaatcaaatgaag
atccacagaggagtttgcttccacaatggagtcgtgtacaaggacaaagatgaatggact
gtggacggctgcactgagtgcacctgccagaactctgctactgtgtgtcgcaaaatctcc
tgccctctgatcccatgtgctaatgccaccgtgcccgatggagagtgctgccctcgctgt
ggaacacagaactatgaggaggatggatggtctccctggtctgaatggacccattgttca
gtgacttgtggccgtggcatccagcaacgtggacgctcgtgtgaccgcatcaacagcaac
tgtgagggcacctctgtccagacccgtgactgctatcctcaggaatgtgacaaacgcttc
aaacaggatggtggttggagtcactggtccccctggtcatcatgctctgtgacctgtggt
gagggggtcatcacccggatccgcctctgtaactctcccacgccccagttgggtggcagg
gactgcgagggagaaggacgtcagactgaaatatgccagaagtcgccttgccctatcaat
ggaggttggggaccttggtcaccatgggacacctgcactgttacctgtggtggaggagtt
cagacccgcaaacgtctctgctctgaccctgtccccaaatatggtggaaaagactgtgtt
ggtgatgccaccatgtctcaattgtgcaacaaacaggactgtcctattgatggttgtctg
tccagcccatgcttctcaggcgcaaagtgcaccagcttccctgatggttctttcaggtgt
ggcaaatgtccactcggctatcgtgggaatggcgtcatctgcaaggatattgatgagtgt
aaagaagtacctgatgcttgccacactcataacggaatccatcgctgtgagaatactgcg
cctggttacaactgtttgccttgccccacacgtttctctggccttcagccctttggaaga
ggagtggaacaggcaactgctaaaaaacaggtttgcatgcctcgtaacccttgccaggat
ggtagccataactgcaataaaaatgcaaaatgcatctacttgggtgtctactccgagtcc
atgttccgctgcgagtgcaagccaggatacgccgggaatggccggatctgtggcgaggat
actgacctggatggatggcccaacactgacctgctgtgtgtggagaatgctacctaccac
tgcaagaaggataactgccccaaccttcccaactctggtcaggaagaccatgacaaagat
ggcctgggtgatgaatgtgaccatgatgatgacaatgatgggatccccgatgatagggac
aactgcccaagagtgtacaaccctgcccagtacgacgcagacagggatgatgttggcgac
agttgtgacaactgtgtttttgaggccaatgccgaccaaaccgacactgacaacaatgga
gagggtgatgcctgtgctgtggacattgatggcgatggcattctgaatgagaacgacaac
tgcccttatgtttacaatgtggaccagagagatactgatagggatggtgtgggagaccat
tgtgacaactgccctctggagcacaatcctgatcagatcgactctgactcagatctcata
ggagacaagtgcgacaacaaccaggacattgacgaggatggtcaccagaacaacttggac
aactgcccctatatccctaatgccaaccaggcggaccatgacaaggatggcaagggtgac
gcctgcgaccatgacgacgacaatgacggcatacccgatgacaaagacaactgtcgactg
gcctttaaccccgatcaactggattctgatggtgatggccgtggtgatgtttgcaaagac
gattttgatcaagacaatgttctggacatctatgacgtgtgtccggaaaactttgccatc
agcgaaacagacttccgcagattccagatggttcctctggaccctaagggtacctcccag
attgatcccaactgggtggtccggcatcagggcaaagagttggtccagacagtcaactgt
gatcctggcattgctgttggttatgatgagttcagtgcagtggatttcagcggaacattc
ttcatcaacacggacagagatgatgattatgctgggtttgtgtttggctaccagtccagc
tcgcgcttctacacggtcatgtggaagcagatcacgcagacctactggtcccacacaccc
acaagagctcaaggctactctggcctgtcaatcaaagtggtcaactccaccactggccct
ggtgagcacctgaggaatgccttgtggcacaccggtgacacctcaggacaggttcgcact
ctgtggcacgaccccaagaacattggctggaaggacttcactgcctacaggtggcacctg
atccatagacccaagactggacttatcagagtggtcatgtatgaaggcaagagaatcatg
gccgattctggaaacatctttgacaagacatacgctggtgggcgactaggcttgtacgtc
ttctctcaggagatggtttatttctcagacctaaaatatgaatgcagagatacataa
DBGET
integrated database retrieval system
