KEGG   Paralichthys olivaceus (Japanese flounder): 109637261
Entry
109637261         CDS       T06037                                 
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6
  KO
K03175  TNF receptor-associated factor 6 [EC:2.3.2.27]
Organism
pov  Paralichthys olivaceus (Japanese flounder)
Pathway
pov04010  MAPK signaling pathway
pov04120  Ubiquitin mediated proteolysis
pov04140  Autophagy - animal
pov04144  Endocytosis
pov04620  Toll-like receptor signaling pathway
pov04621  NOD-like receptor signaling pathway
pov04622  RIG-I-like receptor signaling pathway
pov05132  Salmonella infection
pov05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:pov00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    109637261 (traf6)
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    109637261 (traf6)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    109637261 (traf6)
   04140 Autophagy - animal
    109637261 (traf6)
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    109637261 (traf6)
   04621 NOD-like receptor signaling pathway
    109637261 (traf6)
   04622 RIG-I-like receptor signaling pathway
    109637261 (traf6)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    109637261 (traf6)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    109637261 (traf6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pov04131]
    109637261 (traf6)
   04121 Ubiquitin system [BR:pov04121]
    109637261 (traf6)
Enzymes [BR:pov01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     109637261 (traf6)
Membrane trafficking [BR:pov04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Ubiquitin E3 ligases
    109637261 (traf6)
Ubiquitin system [BR:pov04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    109637261 (traf6)
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 zf-TRAF zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-C3HC4_3 TRAF6_Z2 zf-C3HC4_4 zf-RING_5 U-box RING_XB3-XBAT31 zf-RING_11 TRAF3_RING DM BLI1 CEP104_ZnF
Other DBs
NCBI-GeneID: 109637261
NCBI-ProteinID: XP_019955056
UniProt: A0A0B5CVF5
LinkDB
Position
Unknown
AA seq 570 aa
MACFDVKGSLEEDSYEGAVGGELSSCALAMLEKERESLLSPSESSGTLISGNSTSLQAAV
PLQGYDVEFDPPLESKYECPICLMALRNAVQTPCGHRFCKNCIEKSIRDTGQRCPVDNEM
LSEDQLFPDNFAKREILSLTVCCPNSGCVDKMELRHLENHLAQCQFATAPCPQCQQSVRK
SHLEEHTTVECQRRPVSCPDCVACFVYEESELHEQQCPFANVKCQYCEMDLIRDQIESHC
DTDCPKAPIACNFSTFGCKERMQRHNLAQHMQEFTQMHMWYMAEFLRGFSLNGTTPKSLW
AHGPSVSSEDQGAAASLSSSSGLRGASGGSINCASAQPNDEMQRLREMDGRLVTQDHRLR
ELTILKETQAGQLVELRRRVSMLEETVKALEAQQCHGIFIWHLKGFSAHLQKQEAGLPVV
EHSPGFYTGYPGYKLCLRLHLQTPNAPRCSNFISLFVHTMQGAFDGELTWPFQGTIRLAI
LDQGPEGQNHMEVMETKPDLQAFQKPTIQRNPKGFGYVTFMHLNQLNQRAFVKDDTLLIR
CDVTSRFDNMPHRDVPTVQPRGHEASVSRD
NT seq 1713 nt   +upstreamnt  +downstreamnt
atggcttgctttgatgtcaaggggagtctggaggaggatagctatgaaggagctgttggt
ggagagctgtctagttgtgctttggcaatgctggaaaaagagcgagaatcccttctcagc
ccatcagagagctctggtaccctcatcagcggcaactccacaagtcttcaggctgctgtc
cccctccagggctacgacgtggagtttgacccgcccctggagagtaaatacgagtgccct
atctgcctcatggctcttaggaatgctgttcaaacaccctgcggtcaccgtttctgcaag
aactgcattgagaaatccattcgtgacacaggacagagatgccctgtggacaacgaaatg
ctgtcggaagatcagctgtttcctgataactttgccaaacgggagattctatcactaact
gtttgctgtccaaactctggttgtgttgataaaatggagctacgacatttggagaatcat
ttggctcagtgtcagtttgcgacggcgccttgcccacagtgccagcagtctgtgagaaag
agccacttagaggagcacacaactgttgagtgccaaaggagacctgtgtcatgtcctgat
tgtgtggcatgctttgtttatgaggagagcgagcttcacgagcagcagtgtccctttgct
aacgtgaagtgtcagtactgtgagatggatctcatcagagaccagattgaatctcattgt
gacacagattgcccaaaagcacccatcgcctgtaactttagcacctttggatgtaaggaa
aggatgcagcgccataacctggcacagcacatgcaggagttcacacagatgcacatgtgg
tacatggctgagttcctgcgtggctttagcctcaatggcaccacacccaaatccctgtgg
gcgcatggaccttctgtttcctcagaggatcaaggagctgcagcatcgctatcttcctct
agtgggctcagaggggcttcaggcggcagcatcaactgtgcttcggctcagcctaatgac
gagatgcagcggctcagagagatggatggacgattggtgacgcaggatcaccggctacgt
gagctcaccatcttaaaagaaacacaggcaggtcagcttgtagagctccggcgtagggtg
tcaatgctggaggaaactgtaaaggcgctggaggcccagcagtgccatggtatcttcatc
tggcacctcaaaggtttctctgcccacctgcagaaacaagaagctggactcccagtggtc
gagcacagccctggcttctacacgggctacccaggctacaagctgtgcctgcgtttacac
ctgcagacacccaacgccccgcgctgctccaacttcatctccctgtttgtccacaccatg
cagggagcttttgacggggagctgacctggccgttccaaggcaccatccggctcgccatc
ctcgaccagggccccgagggtcaaaaccacatggaggtgatggaaactaagccagacctg
caagcctttcagaagcccaccatccagcgcaatcccaaaggatttggctacgtcaccttc
atgcacctgaatcagctgaatcagagagcctttgttaaagatgacaccttacttatccgc
tgtgatgtgacgtcgcgttttgacaatatgcctcatcgtgacgtaccaacggtgcagcct
agagggcatgaggcatcggtttcgagggactaa

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